miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2935 5' -59.4 NC_001493.1 + 30766 0.66 0.760221
Target:  5'- aGGCGAUCu---CCGUGAguuaCACCGCGAu -3'
miRNA:   3'- -CCGCUGGccguGGCACUg---GUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 38766 0.66 0.760221
Target:  5'- uGGCGAUCGGgagagacuUugCGaUGAuggUCACCGCGAa -3'
miRNA:   3'- -CCGCUGGCC--------GugGC-ACU---GGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 95179 0.66 0.759295
Target:  5'- aGUaGCCGGaaauCCGUGACCAcgagaugaugcgcCCACGGa -3'
miRNA:   3'- cCGcUGGCCgu--GGCACUGGU-------------GGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 21064 0.66 0.750909
Target:  5'- cGGCGGguacgcuccCgCGGCACCGggGAUCcCCAUGGa -3'
miRNA:   3'- -CCGCU---------G-GCCGUGGCa-CUGGuGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 97866 0.67 0.741499
Target:  5'- ----cCCGGCACCGUcGCCACC-CGu -3'
miRNA:   3'- ccgcuGGCCGUGGCAcUGGUGGuGCu -5'
2935 5' -59.4 NC_001493.1 + 20586 0.67 0.741499
Target:  5'- cGCGACCGGCGCa-UGAaggaacucggggUCACCugGc -3'
miRNA:   3'- cCGCUGGCCGUGgcACU------------GGUGGugCu -5'
2935 5' -59.4 NC_001493.1 + 30187 0.67 0.741499
Target:  5'- cGCGGCgGaGCgaGCCGUGAUCAUCgAUGAg -3'
miRNA:   3'- cCGCUGgC-CG--UGGCACUGGUGG-UGCU- -5'
2935 5' -59.4 NC_001493.1 + 124690 0.67 0.731999
Target:  5'- cGCGACCGcGCucCCGggGAUgGCgGCGAg -3'
miRNA:   3'- cCGCUGGC-CGu-GGCa-CUGgUGgUGCU- -5'
2935 5' -59.4 NC_001493.1 + 9135 0.67 0.731999
Target:  5'- cGCGACCGcGCucCCGggGAUgGCgGCGAg -3'
miRNA:   3'- cCGCUGGC-CGu-GGCa-CUGgUGgUGCU- -5'
2935 5' -59.4 NC_001493.1 + 130366 0.67 0.731999
Target:  5'- cGGgGGCUGGCA-CGUGgaGCC-CCGCGu -3'
miRNA:   3'- -CCgCUGGCCGUgGCAC--UGGuGGUGCu -5'
2935 5' -59.4 NC_001493.1 + 14812 0.67 0.731999
Target:  5'- cGGgGGCUGGCA-CGUGgaGCC-CCGCGu -3'
miRNA:   3'- -CCgCUGGCCGUgGCAC--UGGuGGUGCu -5'
2935 5' -59.4 NC_001493.1 + 86861 0.67 0.731999
Target:  5'- cGGUG-CCcGCACCGguacuuucGACCagaGCCGCGAg -3'
miRNA:   3'- -CCGCuGGcCGUGGCa-------CUGG---UGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 42915 0.67 0.722417
Target:  5'- uGGCGAUCGGUugUGgcuUCACgGCGGg -3'
miRNA:   3'- -CCGCUGGCCGugGCacuGGUGgUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62463 0.67 0.712761
Target:  5'- cGUGcCCGuGC-CCGUGGCCGgcucCCGCGGg -3'
miRNA:   3'- cCGCuGGC-CGuGGCACUGGU----GGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 107772 0.67 0.712761
Target:  5'- cGgGugCGGgggugaCACCGUGcUCGCCGCGAu -3'
miRNA:   3'- cCgCugGCC------GUGGCACuGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 67179 0.67 0.712761
Target:  5'- gGGCuGAUCGGCACgaaacacauCGaGugCAUCACGAg -3'
miRNA:   3'- -CCG-CUGGCCGUG---------GCaCugGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 133775 0.67 0.703041
Target:  5'- cGGCGGCacccaGGC-CCccGACCGCC-CGGg -3'
miRNA:   3'- -CCGCUGg----CCGuGGcaCUGGUGGuGCU- -5'
2935 5' -59.4 NC_001493.1 + 18221 0.67 0.703041
Target:  5'- cGGCGGCacccaGGC-CCccGACCGCC-CGGg -3'
miRNA:   3'- -CCGCUGg----CCGuGGcaCUGGUGGuGCU- -5'
2935 5' -59.4 NC_001493.1 + 128509 0.67 0.703041
Target:  5'- gGGCG-CUGGCcgccGCCGaGAUCGCCAuCGGu -3'
miRNA:   3'- -CCGCuGGCCG----UGGCaCUGGUGGU-GCU- -5'
2935 5' -59.4 NC_001493.1 + 91507 0.67 0.703041
Target:  5'- gGGCGuCCGGU-CCGUGACaugggGCCgguGCGGg -3'
miRNA:   3'- -CCGCuGGCCGuGGCACUGg----UGG---UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.