miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29350 5' -54.4 NC_006150.1 + 204712 1.09 0.005232
Target:  5'- cUGCUGUACGAAGCGCUGACGACGCUCu -3'
miRNA:   3'- -ACGACAUGCUUCGCGACUGCUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 214918 0.78 0.428247
Target:  5'- cGCUGU-CGGguaggccccacGGCGCUGGCGguGCGCUCg -3'
miRNA:   3'- aCGACAuGCU-----------UCGCGACUGC--UGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 128699 0.76 0.560903
Target:  5'- cUGCUGUAaCGAGGCGUuccucccccUGAUGACGUUUu -3'
miRNA:   3'- -ACGACAU-GCUUCGCG---------ACUGCUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 202978 0.73 0.702302
Target:  5'- uUGCUGcUGCgGAGGCGgaGGCGACgGCUg -3'
miRNA:   3'- -ACGAC-AUG-CUUCGCgaCUGCUG-CGAg -5'
29350 5' -54.4 NC_006150.1 + 107262 0.73 0.731894
Target:  5'- gGCUGUGCGGcagauuGCGCcGcCGGCGCUUc -3'
miRNA:   3'- aCGACAUGCUu-----CGCGaCuGCUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 70296 0.72 0.788535
Target:  5'- aGCUG---GAAGCGCucgUGGCGGCGCUg -3'
miRNA:   3'- aCGACaugCUUCGCG---ACUGCUGCGAg -5'
29350 5' -54.4 NC_006150.1 + 101997 0.71 0.797541
Target:  5'- cGCgUGUcCGAGGCGgaGGCGcUGCUCa -3'
miRNA:   3'- aCG-ACAuGCUUCGCgaCUGCuGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 152524 0.71 0.812507
Target:  5'- aGCUGUACGugucAGGCGCcacgaaaaaggaucUGauuaaugcgGCGACGCUCu -3'
miRNA:   3'- aCGACAUGC----UUCGCG--------------AC---------UGCUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 83274 0.71 0.832007
Target:  5'- aGCUGUcCGAuguucucaucaAGCGCUcGCGGCGCg- -3'
miRNA:   3'- aCGACAuGCU-----------UCGCGAcUGCUGCGag -5'
29350 5' -54.4 NC_006150.1 + 38105 0.7 0.871015
Target:  5'- cGCgaaUGCGggGCGCUGGCugccucuCGCUUg -3'
miRNA:   3'- aCGac-AUGCuuCGCGACUGcu-----GCGAG- -5'
29350 5' -54.4 NC_006150.1 + 4199 0.69 0.891936
Target:  5'- cUGCUGUGCGGucuGUGCgUGACaGGCaGCUg -3'
miRNA:   3'- -ACGACAUGCUu--CGCG-ACUG-CUG-CGAg -5'
29350 5' -54.4 NC_006150.1 + 217976 0.68 0.916675
Target:  5'- aUGCUGUguGCucGGCGCcGACGGCGggCu -3'
miRNA:   3'- -ACGACA--UGcuUCGCGaCUGCUGCgaG- -5'
29350 5' -54.4 NC_006150.1 + 219921 0.68 0.922278
Target:  5'- aGC-GUGCGGAG-GUUGACGACGauggUCg -3'
miRNA:   3'- aCGaCAUGCUUCgCGACUGCUGCg---AG- -5'
29350 5' -54.4 NC_006150.1 + 217255 0.68 0.927645
Target:  5'- cGCuUGU-CGAGGCGUUGGUGGCGUUa -3'
miRNA:   3'- aCG-ACAuGCUUCGCGACUGCUGCGAg -5'
29350 5' -54.4 NC_006150.1 + 86184 0.68 0.927645
Target:  5'- cGCUGUGCGAccguucgacgccAGUGgUGauuGCGcCGCUCu -3'
miRNA:   3'- aCGACAUGCU------------UCGCgAC---UGCuGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 205793 0.68 0.937193
Target:  5'- cUGCUGUaACGAAcCGCUGuguGCGuuagguuACGCUCu -3'
miRNA:   3'- -ACGACA-UGCUUcGCGAC---UGC-------UGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 109190 0.68 0.942334
Target:  5'- gGCUGUguugcgugcagACGAGGCGCagGAUuuggcaggugaGGCGUUCg -3'
miRNA:   3'- aCGACA-----------UGCUUCGCGa-CUG-----------CUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 152040 0.68 0.942334
Target:  5'- gUGCUGguauugccUGCGGugguGCuGCUGGCcuuGGCGCUCg -3'
miRNA:   3'- -ACGAC--------AUGCUu---CG-CGACUG---CUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 85660 0.67 0.950962
Target:  5'- cGCcGUACacAGCGCcgccagaucgGugGGCGCUCg -3'
miRNA:   3'- aCGaCAUGcuUCGCGa---------CugCUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 119520 0.67 0.957581
Target:  5'- aGCcgGUggacGCGGAGCGCguucgcggcgucuuUGGCG-CGCUCu -3'
miRNA:   3'- aCGa-CA----UGCUUCGCG--------------ACUGCuGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.