miRNA display CGI


Results 21 - 27 of 27 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29350 5' -54.4 NC_006150.1 + 101997 0.71 0.797541
Target:  5'- cGCgUGUcCGAGGCGgaGGCGcUGCUCa -3'
miRNA:   3'- aCG-ACAuGCUUCGCgaCUGCuGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 70296 0.72 0.788535
Target:  5'- aGCUG---GAAGCGCucgUGGCGGCGCUg -3'
miRNA:   3'- aCGACaugCUUCGCG---ACUGCUGCGAg -5'
29350 5' -54.4 NC_006150.1 + 107262 0.73 0.731894
Target:  5'- gGCUGUGCGGcagauuGCGCcGcCGGCGCUUc -3'
miRNA:   3'- aCGACAUGCUu-----CGCGaCuGCUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 202978 0.73 0.702302
Target:  5'- uUGCUGcUGCgGAGGCGgaGGCGACgGCUg -3'
miRNA:   3'- -ACGAC-AUG-CUUCGCgaCUGCUG-CGAg -5'
29350 5' -54.4 NC_006150.1 + 128699 0.76 0.560903
Target:  5'- cUGCUGUAaCGAGGCGUuccucccccUGAUGACGUUUu -3'
miRNA:   3'- -ACGACAU-GCUUCGCG---------ACUGCUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 214918 0.78 0.428247
Target:  5'- cGCUGU-CGGguaggccccacGGCGCUGGCGguGCGCUCg -3'
miRNA:   3'- aCGACAuGCU-----------UCGCGACUGC--UGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 204712 1.09 0.005232
Target:  5'- cUGCUGUACGAAGCGCUGACGACGCUCu -3'
miRNA:   3'- -ACGACAUGCUUCGCGACUGCUGCGAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.