miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29351 3' -51.1 NC_006150.1 + 1423 0.66 0.997204
Target:  5'- gGCGAGgagg-UGUUGGCGC--AGGCg -3'
miRNA:   3'- -CGCUUaaaaaGCGACCGCGagUCCGa -5'
29351 3' -51.1 NC_006150.1 + 75781 0.66 0.996135
Target:  5'- -aGGAgca---GCUGGCGCUCAaGGUc -3'
miRNA:   3'- cgCUUaaaaagCGACCGCGAGU-CCGa -5'
29351 3' -51.1 NC_006150.1 + 119530 0.66 0.996135
Target:  5'- cGCGGAgcgcgUUCGC-GGCGuCUUuGGCg -3'
miRNA:   3'- -CGCUUaaa--AAGCGaCCGC-GAGuCCGa -5'
29351 3' -51.1 NC_006150.1 + 80239 0.67 0.994753
Target:  5'- cCGAGgaauagUCGCUGGCacGCUCAcacugucuGGCUc -3'
miRNA:   3'- cGCUUaaaa--AGCGACCG--CGAGU--------CCGA- -5'
29351 3' -51.1 NC_006150.1 + 92853 0.67 0.993925
Target:  5'- uGCGggUUg--CGgUGGguauaGUUCAGGCa -3'
miRNA:   3'- -CGCuuAAaaaGCgACCg----CGAGUCCGa -5'
29351 3' -51.1 NC_006150.1 + 12874 0.67 0.992996
Target:  5'- cGUGGug--UUUGUgUGuGCGCUCAGGCa -3'
miRNA:   3'- -CGCUuaaaAAGCG-AC-CGCGAGUCCGa -5'
29351 3' -51.1 NC_006150.1 + 202873 0.67 0.992593
Target:  5'- cGCGGGcaccuggaaCGCgGGCGcCUCGGGCg -3'
miRNA:   3'- -CGCUUaaaaa----GCGaCCGC-GAGUCCGa -5'
29351 3' -51.1 NC_006150.1 + 181093 0.67 0.992386
Target:  5'- aGCGAcgccgacgcCGCUGuuGCUCAGGCc -3'
miRNA:   3'- -CGCUuaaaaa---GCGACcgCGAGUCCGa -5'
29351 3' -51.1 NC_006150.1 + 46330 0.67 0.991956
Target:  5'- gGCGAAggUUUaGaCUGGCGuCUaCGGGCa -3'
miRNA:   3'- -CGCUUaaAAAgC-GACCGC-GA-GUCCGa -5'
29351 3' -51.1 NC_006150.1 + 142599 0.68 0.986521
Target:  5'- aGCGAGgacugUCacgGCUGGUGCUCaaggaugcguuAGGCUu -3'
miRNA:   3'- -CGCUUaaaa-AG---CGACCGCGAG-----------UCCGA- -5'
29351 3' -51.1 NC_006150.1 + 126201 0.68 0.982917
Target:  5'- cGCGAGguguaUCGCgaaaucaaagcGGUGCUCAGGUc -3'
miRNA:   3'- -CGCUUaaaa-AGCGa----------CCGCGAGUCCGa -5'
29351 3' -51.1 NC_006150.1 + 72137 0.68 0.982917
Target:  5'- gGCGucg-UUUCGCUcGGCGC--GGGCg -3'
miRNA:   3'- -CGCuuaaAAAGCGA-CCGCGagUCCGa -5'
29351 3' -51.1 NC_006150.1 + 78290 0.7 0.964503
Target:  5'- uCGGAgcugUCGgUGGUGCUguGGCUu -3'
miRNA:   3'- cGCUUaaaaAGCgACCGCGAguCCGA- -5'
29351 3' -51.1 NC_006150.1 + 204822 1.1 0.010329
Target:  5'- uGCGAAUUUUUCGCUGGCGCUCAGGCUc -3'
miRNA:   3'- -CGCUUAAAAAGCGACCGCGAGUCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.