miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29353 5' -58.9 NC_006150.1 + 114040 0.66 0.886077
Target:  5'- uUCggGGUCgCGGuGCggGCUGAGCGGcUCg -3'
miRNA:   3'- -AGagCCAG-GCU-CGa-CGGCUCGCCaAG- -5'
29353 5' -58.9 NC_006150.1 + 214094 0.66 0.886077
Target:  5'- cUUCGGaCCucGCUGUCGAaGCGaGUUCu -3'
miRNA:   3'- aGAGCCaGGcuCGACGGCU-CGC-CAAG- -5'
29353 5' -58.9 NC_006150.1 + 75886 0.66 0.88209
Target:  5'- aCUCugugcuGUCCGAGCUGCugacaaaaUggguuucgcagcggcGAGCGGUUCg -3'
miRNA:   3'- aGAGc-----CAGGCUCGACG--------G---------------CUCGCCAAG- -5'
29353 5' -58.9 NC_006150.1 + 4081 0.66 0.865418
Target:  5'- gUCUCG--CCGAGCauagcgucagGCuCGAGCGGUUa -3'
miRNA:   3'- -AGAGCcaGGCUCGa---------CG-GCUCGCCAAg -5'
29353 5' -58.9 NC_006150.1 + 216253 0.67 0.798885
Target:  5'- gUCUCGGUgCGGGCUGagauccugcgcaaCGAGCGa--- -3'
miRNA:   3'- -AGAGCCAgGCUCGACg------------GCUCGCcaag -5'
29353 5' -58.9 NC_006150.1 + 109745 0.68 0.767152
Target:  5'- cCUCGGUaaaaCGuuugcGCUGgaCGAGCGGUUUg -3'
miRNA:   3'- aGAGCCAg---GCu----CGACg-GCUCGCCAAG- -5'
29353 5' -58.9 NC_006150.1 + 47837 0.69 0.720799
Target:  5'- gUUCaGGUCCGAGuCUGCUGGGagagGGUUg -3'
miRNA:   3'- aGAG-CCAGGCUC-GACGGCUCg---CCAAg -5'
29353 5' -58.9 NC_006150.1 + 92352 0.7 0.633635
Target:  5'- -gUCGGcgucCCGAGUcuggGCCGGGCGGUg- -3'
miRNA:   3'- agAGCCa---GGCUCGa---CGGCUCGCCAag -5'
29353 5' -58.9 NC_006150.1 + 92533 0.72 0.527318
Target:  5'- uUCUCGGUCgcUGAGCUGCgaGAGCGcGggCc -3'
miRNA:   3'- -AGAGCCAG--GCUCGACGg-CUCGC-CaaG- -5'
29353 5' -58.9 NC_006150.1 + 196916 0.74 0.436884
Target:  5'- aCUUGGUCUGGGCUGuuG-GCGGg-- -3'
miRNA:   3'- aGAGCCAGGCUCGACggCuCGCCaag -5'
29353 5' -58.9 NC_006150.1 + 205864 1.1 0.001983
Target:  5'- aUCUCGGUCCGAGCUGCCGAGCGGUUCa -3'
miRNA:   3'- -AGAGCCAGGCUCGACGGCUCGCCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.