Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29355 | 3' | -59.5 | NC_006150.1 | + | 130049 | 0.66 | 0.86945 |
|
Target: 5'- cGGUcUGUCCCGGCagaauGUGAcuaaGUGUGACg -3' miRNA: 3'- cCUAcGCGGGGCCGg----CACU----CACACUG- -5' |
|||||||
| 29355 | 3' | -59.5 | NC_006150.1 | + | 55665 | 0.67 | 0.799071 |
|
Target: 5'- uGAUGCGCgagagcgacaaCUCGGCCGUGcaUGUGGa -3' miRNA: 3'- cCUACGCG-----------GGGCCGGCACucACACUg -5' |
|||||||
| 29355 | 3' | -59.5 | NC_006150.1 | + | 109807 | 0.68 | 0.772911 |
|
Target: 5'- aGGAUGaUGUUCCGGCgUGUG-GUGUGGu -3' miRNA: 3'- -CCUAC-GCGGGGCCG-GCACuCACACUg -5' |
|||||||
| 29355 | 3' | -59.5 | NC_006150.1 | + | 101307 | 0.68 | 0.73555 |
|
Target: 5'- cGAUGCGCCgaGGCCuggcacuGUGuguccuggcAGUGUGGCu -3' miRNA: 3'- cCUACGCGGggCCGG-------CAC---------UCACACUG- -5' |
|||||||
| 29355 | 3' | -59.5 | NC_006150.1 | + | 857 | 0.71 | 0.601878 |
|
Target: 5'- -cGUGCGCCgggcgCCGGCgGUGuagacGGUGUGGCc -3' miRNA: 3'- ccUACGCGG-----GGCCGgCAC-----UCACACUG- -5' |
|||||||
| 29355 | 3' | -59.5 | NC_006150.1 | + | 214483 | 1.11 | 0.00153 |
|
Target: 5'- gGGAUGCGCCCCGGCCGUGAGUGUGACa -3' miRNA: 3'- -CCUACGCGGGGCCGGCACUCACACUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home