miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29355 5' -57.6 NC_006150.1 + 214517 1.09 0.002857
Target:  5'- uUGACAACAGCCACGGUCGGGGCACACu -3'
miRNA:   3'- -ACUGUUGUCGGUGCCAGCCCCGUGUG- -5'
29355 5' -57.6 NC_006150.1 + 106266 0.77 0.330007
Target:  5'- cGGCAACAGCCGCGGccgCGGGGgGa-- -3'
miRNA:   3'- aCUGUUGUCGGUGCCa--GCCCCgUgug -5'
29355 5' -57.6 NC_006150.1 + 117914 0.77 0.359924
Target:  5'- cUGGCcACAGCCG-GGUCGGucGGCACGCc -3'
miRNA:   3'- -ACUGuUGUCGGUgCCAGCC--CCGUGUG- -5'
29355 5' -57.6 NC_006150.1 + 55176 0.73 0.534974
Target:  5'- aUGACGACGGCUGCGGcUCGGGaCugGa -3'
miRNA:   3'- -ACUGUUGUCGGUGCC-AGCCCcGugUg -5'
29355 5' -57.6 NC_006150.1 + 95483 0.72 0.593562
Target:  5'- cUGuCAGCGGCgGgcuuCGGUUGGGGCAgACu -3'
miRNA:   3'- -ACuGUUGUCGgU----GCCAGCCCCGUgUG- -5'
29355 5' -57.6 NC_006150.1 + 152383 0.72 0.603455
Target:  5'- gUGGCAauacuugaagGCGGCCACGGccugCGGGGUGUGCg -3'
miRNA:   3'- -ACUGU----------UGUCGGUGCCa---GCCCCGUGUG- -5'
29355 5' -57.6 NC_006150.1 + 218952 0.71 0.662991
Target:  5'- aGACGGaagGGUCACGGUcaCGGGGCugAa -3'
miRNA:   3'- aCUGUUg--UCGGUGCCA--GCCCCGugUg -5'
29355 5' -57.6 NC_006150.1 + 147363 0.71 0.682729
Target:  5'- cGGCAAaAGCCGCGGcCGaGGCugACc -3'
miRNA:   3'- aCUGUUgUCGGUGCCaGCcCCGugUG- -5'
29355 5' -57.6 NC_006150.1 + 88603 0.7 0.71202
Target:  5'- gGACcgcACAGCuCGCaGGUgGGGGCGuCGCg -3'
miRNA:   3'- aCUGu--UGUCG-GUG-CCAgCCCCGU-GUG- -5'
29355 5' -57.6 NC_006150.1 + 87926 0.7 0.731242
Target:  5'- gGGCcucGCAGCCuCGGUgGGGGgGCGg -3'
miRNA:   3'- aCUGu--UGUCGGuGCCAgCCCCgUGUg -5'
29355 5' -57.6 NC_006150.1 + 170499 0.69 0.759446
Target:  5'- gGugAGCacgAGCCACGGUCGcGGGauuguuggucacUGCACg -3'
miRNA:   3'- aCugUUG---UCGGUGCCAGC-CCC------------GUGUG- -5'
29355 5' -57.6 NC_006150.1 + 174100 0.69 0.759446
Target:  5'- aUGAUuuCGGCCAgGGcggCGGGGCAg-- -3'
miRNA:   3'- -ACUGuuGUCGGUgCCa--GCCCCGUgug -5'
29355 5' -57.6 NC_006150.1 + 87634 0.69 0.777732
Target:  5'- --cCAACGGUCugGGuuaUCGGGGCuGCAUu -3'
miRNA:   3'- acuGUUGUCGGugCC---AGCCCCG-UGUG- -5'
29355 5' -57.6 NC_006150.1 + 81426 0.69 0.777732
Target:  5'- gGGCGGCGGCgGCaGagGGGGUggGCGCg -3'
miRNA:   3'- aCUGUUGUCGgUGcCagCCCCG--UGUG- -5'
29355 5' -57.6 NC_006150.1 + 74963 0.69 0.786695
Target:  5'- cUGuuGACGGUCGCaGUagCGGGGUGCGCa -3'
miRNA:   3'- -ACugUUGUCGGUGcCA--GCCCCGUGUG- -5'
29355 5' -57.6 NC_006150.1 + 128898 0.69 0.786695
Target:  5'- aGGCGGCAGCCGCcGagGGGGgagaaaCAUACg -3'
miRNA:   3'- aCUGUUGUCGGUGcCagCCCC------GUGUG- -5'
29355 5' -57.6 NC_006150.1 + 206168 0.68 0.812767
Target:  5'- gUGGCAAauacgaaCC-CGGUCGGGGUACGg -3'
miRNA:   3'- -ACUGUUguc----GGuGCCAGCCCCGUGUg -5'
29355 5' -57.6 NC_006150.1 + 173665 0.68 0.821159
Target:  5'- cGACGGCuuGCCGCGGcaugcaaGGGGaACACc -3'
miRNA:   3'- aCUGUUGu-CGGUGCCag-----CCCCgUGUG- -5'
29355 5' -57.6 NC_006150.1 + 149311 0.68 0.83745
Target:  5'- gUGGCGGCAGCgGCGGUagcagcaguacUGGuGGCAgCAg -3'
miRNA:   3'- -ACUGUUGUCGgUGCCA-----------GCC-CCGU-GUg -5'
29355 5' -57.6 NC_006150.1 + 69519 0.67 0.853038
Target:  5'- cGAgAACugcGCCACGcucuGUCGGGGuUGCACc -3'
miRNA:   3'- aCUgUUGu--CGGUGC----CAGCCCC-GUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.