Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29356 | 3' | -60.5 | NC_006150.1 | + | 74521 | 0.7 | 0.590303 |
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Target: 5'- --aAUCGucGCGCGCCGCCAGCaGCa-- -3' miRNA: 3'- gugUAGCu-CGCGUGGCGGUCG-CGgca -5' |
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| 29356 | 3' | -60.5 | NC_006150.1 | + | 55792 | 0.7 | 0.571018 |
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Target: 5'- gGC-UUGAGcCGCAaaGCCAGCGUCGg -3' miRNA: 3'- gUGuAGCUC-GCGUggCGGUCGCGGCa -5' |
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| 29356 | 3' | -60.5 | NC_006150.1 | + | 180847 | 0.7 | 0.561431 |
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Target: 5'- -uCAUCGGGCGUcaagacaccgGCUGCgGGCGCCa- -3' miRNA: 3'- guGUAGCUCGCG----------UGGCGgUCGCGGca -5' |
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| 29356 | 3' | -60.5 | NC_006150.1 | + | 133032 | 0.72 | 0.44252 |
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Target: 5'- cCGCucgaGAGCGUugCGCCAGCGCa-- -3' miRNA: 3'- -GUGuag-CUCGCGugGCGGUCGCGgca -5' |
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| 29356 | 3' | -60.5 | NC_006150.1 | + | 70785 | 0.73 | 0.425474 |
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Target: 5'- gCGCcagCGAGCGCACC-CCuuGCGCCGc -3' miRNA: 3'- -GUGua-GCUCGCGUGGcGGu-CGCGGCa -5' |
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| 29356 | 3' | -60.5 | NC_006150.1 | + | 58586 | 0.74 | 0.346464 |
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Target: 5'- cCGCcUCGAGC---CCGCCGGCGCCGg -3' miRNA: 3'- -GUGuAGCUCGcguGGCGGUCGCGGCa -5' |
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| 29356 | 3' | -60.5 | NC_006150.1 | + | 217352 | 0.77 | 0.254482 |
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Target: 5'- gCGCAgucgccaaGAGCGCACCGCCcuGCGCUGg -3' miRNA: 3'- -GUGUag------CUCGCGUGGCGGu-CGCGGCa -5' |
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| 29356 | 3' | -60.5 | NC_006150.1 | + | 214653 | 1.07 | 0.002137 |
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Target: 5'- aCACAUCGAGCGCACCGCCAGCGCCGUg -3' miRNA: 3'- -GUGUAGCUCGCGUGGCGGUCGCGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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