miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29358 5' -53.2 NC_006150.1 + 70136 0.66 0.987273
Target:  5'- cGCGGCCGUCGAaCCuuuugGCACGcaacagGGAa -3'
miRNA:   3'- -UGUCGGUAGCU-GG-----CGUGCauaa--CCUc -5'
29358 5' -53.2 NC_006150.1 + 33759 0.66 0.985661
Target:  5'- -gAGCUAgggCGGCCGCACGUccaccUGGuGu -3'
miRNA:   3'- ugUCGGUa--GCUGGCGUGCAua---ACCuC- -5'
29358 5' -53.2 NC_006150.1 + 107685 0.66 0.985661
Target:  5'- --uGUgGUCGGCCGCugGg---GGAGc -3'
miRNA:   3'- uguCGgUAGCUGGCGugCauaaCCUC- -5'
29358 5' -53.2 NC_006150.1 + 60917 0.66 0.983897
Target:  5'- cAguGCCAuUUGGgCGUACGUucUGGAGg -3'
miRNA:   3'- -UguCGGU-AGCUgGCGUGCAuaACCUC- -5'
29358 5' -53.2 NC_006150.1 + 18550 0.67 0.977617
Target:  5'- aACAGCCAU--AUCGCAUGUAUauUGGuGu -3'
miRNA:   3'- -UGUCGGUAgcUGGCGUGCAUA--ACCuC- -5'
29358 5' -53.2 NC_006150.1 + 137553 0.68 0.96341
Target:  5'- -aGGUa--CGACCGCACGU--UGGAGu -3'
miRNA:   3'- ugUCGguaGCUGGCGUGCAuaACCUC- -5'
29358 5' -53.2 NC_006150.1 + 100051 0.68 0.956267
Target:  5'- uACGGCCAgugCGAUggaaGUugGUGUuguUGGAGa -3'
miRNA:   3'- -UGUCGGUa--GCUGg---CGugCAUA---ACCUC- -5'
29358 5' -53.2 NC_006150.1 + 1984 0.68 0.956267
Target:  5'- gGCGGCCAcggccUCGccugcagcugaACCGCGCGUGUgcccGAGa -3'
miRNA:   3'- -UGUCGGU-----AGC-----------UGGCGUGCAUAac--CUC- -5'
29358 5' -53.2 NC_006150.1 + 127003 0.68 0.952362
Target:  5'- gACAGCUAg-GGCCgGCACGUGUUGa-- -3'
miRNA:   3'- -UGUCGGUagCUGG-CGUGCAUAACcuc -5'
29358 5' -53.2 NC_006150.1 + 43031 0.69 0.93444
Target:  5'- gACGGUgaAUCGGCCGaUAUGuUGUUGGAGa -3'
miRNA:   3'- -UGUCGg-UAGCUGGC-GUGC-AUAACCUC- -5'
29358 5' -53.2 NC_006150.1 + 106270 0.74 0.724621
Target:  5'- aACAGCCG-CGGCCGCGgGg---GGAGa -3'
miRNA:   3'- -UGUCGGUaGCUGGCGUgCauaaCCUC- -5'
29358 5' -53.2 NC_006150.1 + 215854 1.08 0.008764
Target:  5'- cACAGCCAUCGACCGCACGUAUUGGAGu -3'
miRNA:   3'- -UGUCGGUAGCUGGCGUGCAUAACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.