miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29359 3' -54.6 NC_006150.1 + 182281 0.7 0.891596
Target:  5'- -gCGGcgaggcauAACaAACAUGUCCCCGCuccCGCg -3'
miRNA:   3'- gaGCC--------UUG-UUGUACAGGGGCGu--GCGg -5'
29359 3' -54.6 NC_006150.1 + 40002 0.7 0.87028
Target:  5'- -cCGGGA-AACAucguaguUGUCCCCGCACcugGCCc -3'
miRNA:   3'- gaGCCUUgUUGU-------ACAGGGGCGUG---CGG- -5'
29359 3' -54.6 NC_006150.1 + 182535 0.7 0.863719
Target:  5'- -gCGGAGCGgggACAUGUuuguuaugCCUCGC-CGCCg -3'
miRNA:   3'- gaGCCUUGU---UGUACA--------GGGGCGuGCGG- -5'
29359 3' -54.6 NC_006150.1 + 127163 0.7 0.863719
Target:  5'- uUCGaGGACAGCAaaaUGUCCCCauGUAauUGCCa -3'
miRNA:   3'- gAGC-CUUGUUGU---ACAGGGG--CGU--GCGG- -5'
29359 3' -54.6 NC_006150.1 + 105209 0.7 0.863719
Target:  5'- -gCGGAACAAUcUGUgCCCGUACaguguGCCc -3'
miRNA:   3'- gaGCCUUGUUGuACAgGGGCGUG-----CGG- -5'
29359 3' -54.6 NC_006150.1 + 132698 0.7 0.863719
Target:  5'- uCUCGGAACAugGUGUggcaCCUGuUGCGUCu -3'
miRNA:   3'- -GAGCCUUGUugUACAg---GGGC-GUGCGG- -5'
29359 3' -54.6 NC_006150.1 + 39217 0.71 0.856239
Target:  5'- gUCGG--CGGCAUGuacUCgCCGUACGCCa -3'
miRNA:   3'- gAGCCuuGUUGUAC---AGgGGCGUGCGG- -5'
29359 3' -54.6 NC_006150.1 + 124230 0.71 0.815219
Target:  5'- -aCGGAgaagggcgacgccACGGCGUGcCCCUGCuauCGCCu -3'
miRNA:   3'- gaGCCU-------------UGUUGUACaGGGGCGu--GCGG- -5'
29359 3' -54.6 NC_006150.1 + 120073 0.72 0.798832
Target:  5'- uUCGGAGuCAACGUGaggCCCGUgGCGCCa -3'
miRNA:   3'- gAGCCUU-GUUGUACag-GGGCG-UGCGG- -5'
29359 3' -54.6 NC_006150.1 + 33184 0.72 0.771922
Target:  5'- -gUGGGcuuauuGCGAC-UGcccaUCCCCGCGCGCCg -3'
miRNA:   3'- gaGCCU------UGUUGuAC----AGGGGCGUGCGG- -5'
29359 3' -54.6 NC_006150.1 + 216053 1.13 0.003839
Target:  5'- uCUCGGAACAACAUGUCCCCGCACGCCa -3'
miRNA:   3'- -GAGCCUUGUUGUACAGGGGCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.