miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29359 5' -55 NC_006150.1 + 54572 0.65 0.970501
Target:  5'- aCACCGUUGGaCAGAGuCAGgaauGGCa- -3'
miRNA:   3'- aGUGGCAACC-GUUUCuGUCgc--CCGac -5'
29359 5' -55 NC_006150.1 + 77892 0.66 0.964369
Target:  5'- -gACCGcUUGcGCAAcAGACGGCgaggGGGCUa -3'
miRNA:   3'- agUGGC-AAC-CGUU-UCUGUCG----CCCGAc -5'
29359 5' -55 NC_006150.1 + 117256 0.66 0.964369
Target:  5'- -gGCCGUuguugaggccUGGUaggGAAGACAcGCGGGUg- -3'
miRNA:   3'- agUGGCA----------ACCG---UUUCUGU-CGCCCGac -5'
29359 5' -55 NC_006150.1 + 293 0.66 0.964369
Target:  5'- gUCGCCGUcgugccgaGGCcgcgGAGGACGGCugcccgGGGUUGg -3'
miRNA:   3'- -AGUGGCAa-------CCG----UUUCUGUCG------CCCGAC- -5'
29359 5' -55 NC_006150.1 + 88745 0.66 0.96099
Target:  5'- aCugCGUccagGGCucgucGGGGCAGCcGGCUGc -3'
miRNA:   3'- aGugGCAa---CCGu----UUCUGUCGcCCGAC- -5'
29359 5' -55 NC_006150.1 + 75944 0.66 0.96099
Target:  5'- cUCACgG-UGGagcuGGAgAGUGGGCUGu -3'
miRNA:   3'- -AGUGgCaACCguu-UCUgUCGCCCGAC- -5'
29359 5' -55 NC_006150.1 + 65743 0.66 0.953581
Target:  5'- cUACCG--GGCc-GGACAGCGGcaGCUGg -3'
miRNA:   3'- aGUGGCaaCCGuuUCUGUCGCC--CGAC- -5'
29359 5' -55 NC_006150.1 + 70903 0.66 0.953581
Target:  5'- cCACC--UGGCGGAGGCGgaggagguGUGGGCg- -3'
miRNA:   3'- aGUGGcaACCGUUUCUGU--------CGCCCGac -5'
29359 5' -55 NC_006150.1 + 847 0.67 0.949543
Target:  5'- gCGCCGgcGGUguAGACGGUGuGGCc- -3'
miRNA:   3'- aGUGGCaaCCGuuUCUGUCGC-CCGac -5'
29359 5' -55 NC_006150.1 + 51676 0.67 0.945278
Target:  5'- uUCugUGUUGGgcAAGACGGCgcucaGGGCUc -3'
miRNA:   3'- -AGugGCAACCguUUCUGUCG-----CCCGAc -5'
29359 5' -55 NC_006150.1 + 106149 0.67 0.940783
Target:  5'- gCAgCGUggGGCGGAGACGGgGcacguuGGCUGu -3'
miRNA:   3'- aGUgGCAa-CCGUUUCUGUCgC------CCGAC- -5'
29359 5' -55 NC_006150.1 + 124622 0.67 0.937975
Target:  5'- aUCACCGcaUgcacaaaaagagcaaGGCGgcGGCGGCGGGCg- -3'
miRNA:   3'- -AGUGGCa-A---------------CCGUuuCUGUCGCCCGac -5'
29359 5' -55 NC_006150.1 + 124383 0.67 0.931096
Target:  5'- gCGCUGUUGGCGGAacuaaauCGGCuGGGCg- -3'
miRNA:   3'- aGUGGCAACCGUUUcu-----GUCG-CCCGac -5'
29359 5' -55 NC_006150.1 + 148033 0.68 0.902786
Target:  5'- cUCACCGUccaGGCAccGGACgAGCGuGGCa- -3'
miRNA:   3'- -AGUGGCAa--CCGUu-UCUG-UCGC-CCGac -5'
29359 5' -55 NC_006150.1 + 118336 0.69 0.889849
Target:  5'- gUUGCCGgaGGUAAGGugAGCGGuGUa- -3'
miRNA:   3'- -AGUGGCaaCCGUUUCugUCGCC-CGac -5'
29359 5' -55 NC_006150.1 + 75867 0.69 0.889179
Target:  5'- aCACCG-UGGCAccuugauAGGAaacauCAGUGGGCUc -3'
miRNA:   3'- aGUGGCaACCGU-------UUCU-----GUCGCCCGAc -5'
29359 5' -55 NC_006150.1 + 81424 0.71 0.767597
Target:  5'- gCGgCGgcGGCAGAGGgGGUGGGCg- -3'
miRNA:   3'- aGUgGCaaCCGUUUCUgUCGCCCGac -5'
29359 5' -55 NC_006150.1 + 149238 0.72 0.758197
Target:  5'- uUC-CCG-UGGaGGAGGCGGCGGGCg- -3'
miRNA:   3'- -AGuGGCaACCgUUUCUGUCGCCCGac -5'
29359 5' -55 NC_006150.1 + 71083 0.73 0.699817
Target:  5'- -uGCUGUagUGGCGGccguGGCAGCGGGCa- -3'
miRNA:   3'- agUGGCA--ACCGUUu---CUGUCGCCCGac -5'
29359 5' -55 NC_006150.1 + 109159 0.73 0.669754
Target:  5'- uUCAUCGUcugcacGGCAucGACguccAGCGGGCUGu -3'
miRNA:   3'- -AGUGGCAa-----CCGUuuCUG----UCGCCCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.