miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2936 3' -57.8 NC_001493.1 + 19106 0.66 0.834306
Target:  5'- cUGGacuaucUGACCAUCGCGCgCGG--GUGCCu -3'
miRNA:   3'- cACC------ACUGGUGGUGUG-GCCgcUACGG- -5'
2936 3' -57.8 NC_001493.1 + 105833 0.66 0.834306
Target:  5'- -cGGUGuuCCACUACACCcugGGCGcccAUGgCa -3'
miRNA:   3'- caCCACu-GGUGGUGUGG---CCGC---UACgG- -5'
2936 3' -57.8 NC_001493.1 + 54814 0.66 0.829333
Target:  5'- -cGGUGACCuauccgaauCCAUACCGGguCGuggcagcgccaggcuGUGCCc -3'
miRNA:   3'- caCCACUGGu--------GGUGUGGCC--GC---------------UACGG- -5'
2936 3' -57.8 NC_001493.1 + 36882 0.66 0.825983
Target:  5'- cUGGcGGuCCGCCcCGCCGGUG-UGCg -3'
miRNA:   3'- cACCaCU-GGUGGuGUGGCCGCuACGg -5'
2936 3' -57.8 NC_001493.1 + 61705 0.66 0.825983
Target:  5'- -gGcGUGACCACCA-GCUGcGCGAU-CCg -3'
miRNA:   3'- caC-CACUGGUGGUgUGGC-CGCUAcGG- -5'
2936 3' -57.8 NC_001493.1 + 111198 0.66 0.825983
Target:  5'- -cGGUGGUCAUCAacuucgguCGCCGGgGuGUGCCg -3'
miRNA:   3'- caCCACUGGUGGU--------GUGGCCgC-UACGG- -5'
2936 3' -57.8 NC_001493.1 + 48355 0.66 0.817484
Target:  5'- -cGGUGGaCGCgACGCCGGCGGa--- -3'
miRNA:   3'- caCCACUgGUGgUGUGGCCGCUacgg -5'
2936 3' -57.8 NC_001493.1 + 108870 0.66 0.817484
Target:  5'- -gGGUGugCgACCAuCGCCuGCGAUGgacCCg -3'
miRNA:   3'- caCCACugG-UGGU-GUGGcCGCUAC---GG- -5'
2936 3' -57.8 NC_001493.1 + 96514 0.66 0.814902
Target:  5'- -cGGUGAgCCauGCCGCACCGagccaucgauugucGUGGguUGCCa -3'
miRNA:   3'- caCCACU-GG--UGGUGUGGC--------------CGCU--ACGG- -5'
2936 3' -57.8 NC_001493.1 + 20420 0.66 0.80882
Target:  5'- -aGGUGACC-CCgaguuccuucauGCGCCGGUcgcgacacGGUGUCu -3'
miRNA:   3'- caCCACUGGuGG------------UGUGGCCG--------CUACGG- -5'
2936 3' -57.8 NC_001493.1 + 63126 0.66 0.799997
Target:  5'- uGUGGUGGUCACCACgguGCCGuucgcucccGCGGgcuucGCCg -3'
miRNA:   3'- -CACCACUGGUGGUG---UGGC---------CGCUa----CGG- -5'
2936 3' -57.8 NC_001493.1 + 47082 0.66 0.799106
Target:  5'- -cGGUGccaccccGCCGCuCACGCgGGUGAUGgUg -3'
miRNA:   3'- caCCAC-------UGGUG-GUGUGgCCGCUACgG- -5'
2936 3' -57.8 NC_001493.1 + 31744 0.66 0.791025
Target:  5'- -cGGUGACagagAUACUGGCGgcGCCa -3'
miRNA:   3'- caCCACUGguggUGUGGCCGCuaCGG- -5'
2936 3' -57.8 NC_001493.1 + 21240 0.66 0.791025
Target:  5'- ----aGGCCGCCGCcCCuGGUGAaGCCg -3'
miRNA:   3'- caccaCUGGUGGUGuGG-CCGCUaCGG- -5'
2936 3' -57.8 NC_001493.1 + 99077 0.66 0.791025
Target:  5'- -cGGUGAaaaCCAUCACggACgCGcGCGAUGCg -3'
miRNA:   3'- caCCACU---GGUGGUG--UG-GC-CGCUACGg -5'
2936 3' -57.8 NC_001493.1 + 34273 0.67 0.78191
Target:  5'- -gGGUGGguCCGCCAgcUGCCGGUucGGUGCg -3'
miRNA:   3'- caCCACU--GGUGGU--GUGGCCG--CUACGg -5'
2936 3' -57.8 NC_001493.1 + 95586 0.67 0.78191
Target:  5'- -cGGUGAuaUCAUCACACCgGGCGAg--- -3'
miRNA:   3'- caCCACU--GGUGGUGUGG-CCGCUacgg -5'
2936 3' -57.8 NC_001493.1 + 32019 0.67 0.780992
Target:  5'- -cGGUG-CCACCGCgcucugggauaggACCGuGCGAuaUGCg -3'
miRNA:   3'- caCCACuGGUGGUG-------------UGGC-CGCU--ACGg -5'
2936 3' -57.8 NC_001493.1 + 31978 0.67 0.772664
Target:  5'- -gGGUGAaagcaCGCC-CGCCGuaGAUGCg -3'
miRNA:   3'- caCCACUg----GUGGuGUGGCcgCUACGg -5'
2936 3' -57.8 NC_001493.1 + 62984 0.68 0.724752
Target:  5'- --cGUGACCGUCGCGaCGGCGAaGCCc -3'
miRNA:   3'- cacCACUGGUGGUGUgGCCGCUaCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.