miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2936 5' -53.2 NC_001493.1 + 130559 0.66 0.972802
Target:  5'- gAUGACgGCCGUGAGcagGUCuuccagcacgaccacGCGggGCuCCa -3'
miRNA:   3'- -UGCUG-UGGCGCUUa--CAG---------------UGCuuCG-GG- -5'
2936 5' -53.2 NC_001493.1 + 15005 0.66 0.972802
Target:  5'- gAUGACgGCCGUGAGcagGUCuuccagcacgaccacGCGggGCuCCa -3'
miRNA:   3'- -UGCUG-UGGCGCUUa--CAG---------------UGCuuCG-GG- -5'
2936 5' -53.2 NC_001493.1 + 30914 0.66 0.971675
Target:  5'- cCGuACACCGCGggUucCGCGcaaggGAGUCCc -3'
miRNA:   3'- uGC-UGUGGCGCuuAcaGUGC-----UUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 109805 0.66 0.971675
Target:  5'- -aGACACUGaCGAAgccGUCGCGAGGg-- -3'
miRNA:   3'- ugCUGUGGC-GCUUa--CAGUGCUUCggg -5'
2936 5' -53.2 NC_001493.1 + 111656 0.66 0.968711
Target:  5'- cCGACACCGgG-----CGCGAGuGCCCg -3'
miRNA:   3'- uGCUGUGGCgCuuacaGUGCUU-CGGG- -5'
2936 5' -53.2 NC_001493.1 + 47275 0.66 0.968711
Target:  5'- gACGcCAUCGUGAacGUGUUcaaaACGAucuucgaugAGCCCg -3'
miRNA:   3'- -UGCuGUGGCGCU--UACAG----UGCU---------UCGGG- -5'
2936 5' -53.2 NC_001493.1 + 113534 0.66 0.968711
Target:  5'- cGCGGCgaGCCGaCGAAaauuaGUgAUGGAGUCCg -3'
miRNA:   3'- -UGCUG--UGGC-GCUUa----CAgUGCUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 51375 0.66 0.968711
Target:  5'- uACGACACUGU-AGUGgagCGCcugaAGGCCCu -3'
miRNA:   3'- -UGCUGUGGCGcUUACa--GUGc---UUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 80247 0.66 0.965533
Target:  5'- gGCG-UGCgGCGAccacUGUCccaaguGCGggGCCCa -3'
miRNA:   3'- -UGCuGUGgCGCUu---ACAG------UGCuuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 99093 0.66 0.965533
Target:  5'- -gGACGCgCGCGAugcgaUCGCGAA-CCCg -3'
miRNA:   3'- ugCUGUG-GCGCUuac--AGUGCUUcGGG- -5'
2936 5' -53.2 NC_001493.1 + 65181 0.66 0.965533
Target:  5'- aACGGCacGCCGCGGuUGagCGCaaagaaGAGCCCg -3'
miRNA:   3'- -UGCUG--UGGCGCUuACa-GUGc-----UUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 95399 0.66 0.964537
Target:  5'- cCGugACCGCGAcgcgaauauuucucGgGUcCAUGgcGCCCa -3'
miRNA:   3'- uGCugUGGCGCU--------------UaCA-GUGCuuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 92899 0.66 0.962135
Target:  5'- -gGGCguaUGCGuGUGUCACGAGucccGCCCu -3'
miRNA:   3'- ugCUGug-GCGCuUACAGUGCUU----CGGG- -5'
2936 5' -53.2 NC_001493.1 + 66199 0.66 0.962135
Target:  5'- uACGACGCC-CGucuauugaGUCGCucgaucGAGGCCCu -3'
miRNA:   3'- -UGCUGUGGcGCuua-----CAGUG------CUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 81034 0.66 0.962135
Target:  5'- uCGAguugACCGCGggUGauuUCACGuggaacuuuuGGGCCCu -3'
miRNA:   3'- uGCUg---UGGCGCuuAC---AGUGC----------UUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 7640 0.66 0.962135
Target:  5'- cCGAaACCGCGAAccgaacggGUgAUGggGCUCg -3'
miRNA:   3'- uGCUgUGGCGCUUa-------CAgUGCuuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 123195 0.66 0.962135
Target:  5'- cCGAaACCGCGAAccgaacggGUgAUGggGCUCg -3'
miRNA:   3'- uGCUgUGGCGCUUa-------CAgUGCuuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 57945 0.66 0.959988
Target:  5'- uAUGACACagGCGAuccaauugaacgguUGUCAUGGcguguucgGGCCCg -3'
miRNA:   3'- -UGCUGUGg-CGCUu-------------ACAGUGCU--------UCGGG- -5'
2936 5' -53.2 NC_001493.1 + 96208 0.66 0.958511
Target:  5'- cACG-CACC-CGAAcGUCACGggGUg- -3'
miRNA:   3'- -UGCuGUGGcGCUUaCAGUGCuuCGgg -5'
2936 5' -53.2 NC_001493.1 + 83970 0.66 0.958511
Target:  5'- cGCGAgGCgGCGGAUuUCACGGgaguguuucaggAGCUCc -3'
miRNA:   3'- -UGCUgUGgCGCUUAcAGUGCU------------UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.