miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2936 5' -53.2 NC_001493.1 + 63498 1.13 0.002996
Target:  5'- aACGACACCGCGAAUGUCACGAAGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUUACAGUGCUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 63193 1.13 0.002996
Target:  5'- aACGACACCGCGAAUGUCACGAAGCCCa -3'
miRNA:   3'- -UGCUGUGGCGCUUACAGUGCUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 63070 1.09 0.005126
Target:  5'- aACGAUACCGCGAAUGUCACGAAGCCCa -3'
miRNA:   3'- -UGCUGUGGCGCUUACAGUGCUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 63702 1.05 0.009272
Target:  5'- aACGACACCGCGAAUGUCACGAuGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUUACAGUGCUuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 63579 1.05 0.009272
Target:  5'- aACGACACCGCGAAUGUCACGAuGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUUACAGUGCUuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 62991 0.85 0.166569
Target:  5'- cCGGCACCGUGAccGUCGCGAcggcgaAGCCCa -3'
miRNA:   3'- uGCUGUGGCGCUuaCAGUGCU------UCGGG- -5'
2936 5' -53.2 NC_001493.1 + 64032 0.82 0.261656
Target:  5'- aACGACACCGCGAAUaUCaccacgGCGAcGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUUAcAG------UGCUuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 64074 0.82 0.261656
Target:  5'- aACGACACCGCGAAUaUCaccacgGCGAcGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUUAcAG------UGCUuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 63990 0.82 0.261656
Target:  5'- aACGACACCGCGAAUaUCaccacgGCGAcGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUUAcAG------UGCUuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 63744 0.82 0.261656
Target:  5'- aACGACACCGCGAAUaUCaccacgGCGAcGCCCa -3'
miRNA:   3'- -UGCUGUGGCGCUUAcAG------UGCUuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 63621 0.82 0.261656
Target:  5'- aACGACACCGCGAAUaUCaccacgGCGAcGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUUAcAG------UGCUuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 102692 0.78 0.414014
Target:  5'- uUGGCGUgGCGggUGUCGUGAAGCCCg -3'
miRNA:   3'- uGCUGUGgCGCuuACAGUGCUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 62908 0.77 0.499209
Target:  5'- aACGGCACCGUGAccaccacgacgGCGAAGCCCa -3'
miRNA:   3'- -UGCUGUGGCGCUuacag------UGCUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 62656 0.77 0.499209
Target:  5'- aACGGCACCGUGAccaccacgacgGCGAAGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUuacag------UGCUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 62740 0.77 0.499209
Target:  5'- aACGGCACCGUGAccaccacgacgGCGAAGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUuacag------UGCUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 62698 0.77 0.499209
Target:  5'- aACGGCACCGUGAccaccacgacgGCGAAGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUuacag------UGCUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 62782 0.77 0.499209
Target:  5'- aACGGCACCGUGAccaccacgacgGCGAAGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUuacag------UGCUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 62824 0.77 0.499209
Target:  5'- aACGGCACCGUGAccaccacgacgGCGAAGCCCg -3'
miRNA:   3'- -UGCUGUGGCGCUuacag------UGCUUCGGG- -5'
2936 5' -53.2 NC_001493.1 + 43909 0.75 0.589264
Target:  5'- aACGGcCAUCGCGGA-GUCAuCGggGCUCg -3'
miRNA:   3'- -UGCU-GUGGCGCUUaCAGU-GCuuCGGG- -5'
2936 5' -53.2 NC_001493.1 + 111768 0.74 0.620425
Target:  5'- gACGACuACCaCGAGUGU-GCGGAGCUCa -3'
miRNA:   3'- -UGCUG-UGGcGCUUACAgUGCUUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.