miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29360 3' -49.8 NC_006150.1 + 202832 0.66 0.999444
Target:  5'- aUGgg-UGGAGgcgGAGGCGcuUGAaGCGCGGg -3'
miRNA:   3'- -ACaaaACCUU---UUCCGCu-GCU-CGCGCU- -5'
29360 3' -49.8 NC_006150.1 + 149279 0.66 0.999315
Target:  5'- -----cGGGucguAGGCGACG-GCGCa- -3'
miRNA:   3'- acaaaaCCUuu--UCCGCUGCuCGCGcu -5'
29360 3' -49.8 NC_006150.1 + 51964 0.66 0.999315
Target:  5'- cGgaUUGGAAAAGGUGAUGAuaGaaaaGAc -3'
miRNA:   3'- aCaaAACCUUUUCCGCUGCUcgCg---CU- -5'
29360 3' -49.8 NC_006150.1 + 151901 0.66 0.999315
Target:  5'- gGUgcUGGAAGuggacgauuuGGGUGAUGGGCuCGAu -3'
miRNA:   3'- aCAaaACCUUU----------UCCGCUGCUCGcGCU- -5'
29360 3' -49.8 NC_006150.1 + 42677 0.66 0.999315
Target:  5'- cGUUUUGGuc--GGaCGAUGAaaaucagggucGCGCGAa -3'
miRNA:   3'- aCAAAACCuuuuCC-GCUGCU-----------CGCGCU- -5'
29360 3' -49.8 NC_006150.1 + 142777 0.66 0.99916
Target:  5'- ----cUGGAAAAGGUGGCG-GUggauuuugGCGAu -3'
miRNA:   3'- acaaaACCUUUUCCGCUGCuCG--------CGCU- -5'
29360 3' -49.8 NC_006150.1 + 117273 0.66 0.99916
Target:  5'- gGUag-GGAAGacacgcGGGUGACGAGcCGCa- -3'
miRNA:   3'- aCAaaaCCUUU------UCCGCUGCUC-GCGcu -5'
29360 3' -49.8 NC_006150.1 + 221110 0.66 0.999108
Target:  5'- gGUgUUGGAcaggcagcguuaggAGAGGgGGCGuGCGgGAg -3'
miRNA:   3'- aCAaAACCU--------------UUUCCgCUGCuCGCgCU- -5'
29360 3' -49.8 NC_006150.1 + 134476 0.66 0.999053
Target:  5'- -uUUUUGGcguGGGGgGACGcauggcgaucuuuucAGCGCGAg -3'
miRNA:   3'- acAAAACCuu-UUCCgCUGC---------------UCGCGCU- -5'
29360 3' -49.8 NC_006150.1 + 3018 0.66 0.998976
Target:  5'- -----aGGAGGAGGCa--GAGCGCa- -3'
miRNA:   3'- acaaaaCCUUUUCCGcugCUCGCGcu -5'
29360 3' -49.8 NC_006150.1 + 129617 0.67 0.998758
Target:  5'- cUGUgcgUGGAcgcuuCGugGGGCGCGAg -3'
miRNA:   3'- -ACAaa-ACCUuuuccGCugCUCGCGCU- -5'
29360 3' -49.8 NC_006150.1 + 111497 0.67 0.998758
Target:  5'- cUGg---GGAGAAGGCGAUGAcuauCGCa- -3'
miRNA:   3'- -ACaaaaCCUUUUCCGCUGCUc---GCGcu -5'
29360 3' -49.8 NC_006150.1 + 1214 0.67 0.998758
Target:  5'- gUGUUgUGGAGAGGGU--UGGGUGCa- -3'
miRNA:   3'- -ACAAaACCUUUUCCGcuGCUCGCGcu -5'
29360 3' -49.8 NC_006150.1 + 148304 0.67 0.998503
Target:  5'- gGUgucUGGggGAGGUGACcguGAuccGCGCGu -3'
miRNA:   3'- aCAaa-ACCuuUUCCGCUG---CU---CGCGCu -5'
29360 3' -49.8 NC_006150.1 + 124229 0.67 0.998204
Target:  5'- -----cGGAGAAgGGCGACGccacGGCGUGc -3'
miRNA:   3'- acaaaaCCUUUU-CCGCUGC----UCGCGCu -5'
29360 3' -49.8 NC_006150.1 + 105922 0.67 0.997857
Target:  5'- -----cGGAuGAGGCc-CGAGUGCGAa -3'
miRNA:   3'- acaaaaCCUuUUCCGcuGCUCGCGCU- -5'
29360 3' -49.8 NC_006150.1 + 61318 0.67 0.997857
Target:  5'- aGUgaagGGGAuuGaGCGuCGGGCGUGAg -3'
miRNA:   3'- aCAaaa-CCUUuuC-CGCuGCUCGCGCU- -5'
29360 3' -49.8 NC_006150.1 + 175196 0.67 0.997857
Target:  5'- uUGUgaccgUGGAccuaGAAGGUuuUGAGUGCGAa -3'
miRNA:   3'- -ACAaa---ACCU----UUUCCGcuGCUCGCGCU- -5'
29360 3' -49.8 NC_006150.1 + 126744 0.67 0.997455
Target:  5'- aUGUgcUGGAGAcAGGUugGACGAGgGCa- -3'
miRNA:   3'- -ACAaaACCUUU-UCCG--CUGCUCgCGcu -5'
29360 3' -49.8 NC_006150.1 + 124646 0.68 0.996993
Target:  5'- -----aGGcGgcGGCGGCGGGCGCa- -3'
miRNA:   3'- acaaaaCCuUuuCCGCUGCUCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.