miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29361 3' -63.8 NC_006150.1 + 216383 1.07 0.001126
Target:  5'- gGUCCCUGCCGAGCACCGCAGCCGCCAc -3'
miRNA:   3'- -CAGGGACGGCUCGUGGCGUCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 68431 0.66 0.648796
Target:  5'- aUCCCguccCCGaAGuCACCGCAGCacCGCUAg -3'
miRNA:   3'- cAGGGac--GGC-UC-GUGGCGUCG--GCGGU- -5'
29361 3' -63.8 NC_006150.1 + 496 0.66 0.639206
Target:  5'- cGUCUCUGCgGGGCaggacGCCGgCAGCCuggcGCUg -3'
miRNA:   3'- -CAGGGACGgCUCG-----UGGC-GUCGG----CGGu -5'
29361 3' -63.8 NC_006150.1 + 3701 0.66 0.635368
Target:  5'- cUCUCUGUCGuGGCuguacucgaaccugACCGCcaauagcAGCCGCCAc -3'
miRNA:   3'- cAGGGACGGC-UCG--------------UGGCG-------UCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 119717 0.66 0.610433
Target:  5'- -cCUCUGCUGuauguGCACCGUcGCUGUCAc -3'
miRNA:   3'- caGGGACGGCu----CGUGGCGuCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 202920 0.67 0.581787
Target:  5'- cUUCUUGuuGuGCAacagcaGCAGCCGCCAc -3'
miRNA:   3'- cAGGGACggCuCGUgg----CGUCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 149047 0.67 0.569454
Target:  5'- aGUCCUgcugccaccaguacUGCUGcuacCGCCGCuGCCGCCAc -3'
miRNA:   3'- -CAGGG--------------ACGGCuc--GUGGCGuCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 154567 0.68 0.52457
Target:  5'- aUCaCUUGCUgagcgauGAGCACgGCGGCCGCgAg -3'
miRNA:   3'- cAG-GGACGG-------CUCGUGgCGUCGGCGgU- -5'
29361 3' -63.8 NC_006150.1 + 35944 0.68 0.498107
Target:  5'- gGUCCCUgGCCacacucugcuGCACaCGCAGCUGCuCAg -3'
miRNA:   3'- -CAGGGA-CGGcu--------CGUG-GCGUCGGCG-GU- -5'
29361 3' -63.8 NC_006150.1 + 184836 0.71 0.331564
Target:  5'- aUCCCaGCCGAaugucaguccgagcuGCAgCGCAacGCCGCCAa -3'
miRNA:   3'- cAGGGaCGGCU---------------CGUgGCGU--CGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 88401 0.71 0.328763
Target:  5'- cUCCCUGCgGuGCGCgGaCGGCCGCg- -3'
miRNA:   3'- cAGGGACGgCuCGUGgC-GUCGGCGgu -5'
29361 3' -63.8 NC_006150.1 + 26860 0.73 0.276431
Target:  5'- aUCCCg--CGGGUACCGCAaguGCCGCCAc -3'
miRNA:   3'- cAGGGacgGCUCGUGGCGU---CGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 47964 0.68 0.501723
Target:  5'- gGUCCUUGCCgcgagguguGAGC-CgguccucgaggaggaCGCGGCCGCCGu -3'
miRNA:   3'- -CAGGGACGG---------CUCGuG---------------GCGUCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 219993 0.68 0.498107
Target:  5'- -gUCCUGCCGc-CGCCGCuGCUGCUg -3'
miRNA:   3'- caGGGACGGCucGUGGCGuCGGCGGu -5'
29361 3' -63.8 NC_006150.1 + 170283 0.7 0.420237
Target:  5'- --gCCUGCaCGccgguaucGGCGCCGCgAGCCGCUAu -3'
miRNA:   3'- cagGGACG-GC--------UCGUGGCG-UCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 2232 0.7 0.388064
Target:  5'- uUCagCUGCaggCGAGgGCCGUGGCCGCCGa -3'
miRNA:   3'- cAGg-GACG---GCUCgUGGCGUCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 150216 0.72 0.28886
Target:  5'- -aCCCUGcCCGGGCAggUCGC-GCCGCCc -3'
miRNA:   3'- caGGGAC-GGCUCGU--GGCGuCGGCGGu -5'
29361 3' -63.8 NC_006150.1 + 181103 0.72 0.28886
Target:  5'- -cCCCUGuCCGAGCgacgccgacGCCGCuguugcucaGGCCGCCu -3'
miRNA:   3'- caGGGAC-GGCUCG---------UGGCG---------UCGGCGGu -5'
29361 3' -63.8 NC_006150.1 + 195291 0.75 0.205874
Target:  5'- -aUCCUGCaGAGCGCCGCGGCUGUg- -3'
miRNA:   3'- caGGGACGgCUCGUGGCGUCGGCGgu -5'
29361 3' -63.8 NC_006150.1 + 152648 0.66 0.648796
Target:  5'- aGUCCCgcacaccCCGcAG-GCCGUGGCCGCCu -3'
miRNA:   3'- -CAGGGac-----GGC-UCgUGGCGUCGGCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.