miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29361 5' -57.8 NC_006150.1 + 114284 0.66 0.887972
Target:  5'- cUCAGCccGCAccGCGACCCCgaagaGCAagGCu -3'
miRNA:   3'- cAGUCGu-CGU--CGCUGGGGa----CGUagUG- -5'
29361 5' -57.8 NC_006150.1 + 72129 0.66 0.887972
Target:  5'- -gUAGCAGCAGCaACUgCUGCugcCGCu -3'
miRNA:   3'- caGUCGUCGUCGcUGGgGACGua-GUG- -5'
29361 5' -57.8 NC_006150.1 + 55254 0.66 0.881157
Target:  5'- uUCAGC-GCAGCGAUCUCaGCuUCGa -3'
miRNA:   3'- cAGUCGuCGUCGCUGGGGaCGuAGUg -5'
29361 5' -57.8 NC_006150.1 + 192123 0.66 0.880463
Target:  5'- -gUAGUaugacacauacaaAGuCAGUGACCCCUGUAUUAUc -3'
miRNA:   3'- caGUCG-------------UC-GUCGCUGGGGACGUAGUG- -5'
29361 5' -57.8 NC_006150.1 + 106064 0.66 0.874127
Target:  5'- uUUAGCGGCAGCGGgCC--GCGUgACu -3'
miRNA:   3'- cAGUCGUCGUCGCUgGGgaCGUAgUG- -5'
29361 5' -57.8 NC_006150.1 + 106600 0.66 0.866889
Target:  5'- cUCuGUGGCcacuccAGCGGCCUCgaGCGUCGCg -3'
miRNA:   3'- cAGuCGUCG------UCGCUGGGGa-CGUAGUG- -5'
29361 5' -57.8 NC_006150.1 + 202934 0.66 0.859446
Target:  5'- -aCAGCAGCAGCcGCCaCCUccuccGCuggCACu -3'
miRNA:   3'- caGUCGUCGUCGcUGG-GGA-----CGua-GUG- -5'
29361 5' -57.8 NC_006150.1 + 88816 0.67 0.827754
Target:  5'- -cCGGCGGCuggaGGCGACCUggaUGCggGUCGCg -3'
miRNA:   3'- caGUCGUCG----UCGCUGGGg--ACG--UAGUG- -5'
29361 5' -57.8 NC_006150.1 + 37861 0.67 0.810849
Target:  5'- --aGGCAGcCAGCG-CCCC-GCAUuCGCg -3'
miRNA:   3'- cagUCGUC-GUCGCuGGGGaCGUA-GUG- -5'
29361 5' -57.8 NC_006150.1 + 74366 0.67 0.802158
Target:  5'- cUCAGCAGCGugaagaucgauGUGACCguUCUGCAaCGCa -3'
miRNA:   3'- cAGUCGUCGU-----------CGCUGG--GGACGUaGUG- -5'
29361 5' -57.8 NC_006150.1 + 149033 0.68 0.793318
Target:  5'- aUCGGUAGCAcuaguggacGCccuGACCCCaGCAUCAg -3'
miRNA:   3'- cAGUCGUCGU---------CG---CUGGGGaCGUAGUg -5'
29361 5' -57.8 NC_006150.1 + 157624 0.68 0.793318
Target:  5'- cUCAGCAGCaauAGCaGCCCCaGCAcCAUc -3'
miRNA:   3'- cAGUCGUCG---UCGcUGGGGaCGUaGUG- -5'
29361 5' -57.8 NC_006150.1 + 114418 0.69 0.737623
Target:  5'- aUCAGCAccauGUgaAGCGACCgCUGCcgCGCc -3'
miRNA:   3'- cAGUCGU----CG--UCGCUGGgGACGuaGUG- -5'
29361 5' -57.8 NC_006150.1 + 115459 0.69 0.70846
Target:  5'- -----gGGCAGCGcCUCCUGCAUCAUc -3'
miRNA:   3'- cagucgUCGUCGCuGGGGACGUAGUG- -5'
29361 5' -57.8 NC_006150.1 + 219754 0.73 0.519561
Target:  5'- -gCAGCGGCGGCGGCaggaCCUGgCGUgGCc -3'
miRNA:   3'- caGUCGUCGUCGCUGg---GGAC-GUAgUG- -5'
29361 5' -57.8 NC_006150.1 + 141138 0.75 0.377027
Target:  5'- --gAGCGGC-GUGugCCCUGCAUCAUu -3'
miRNA:   3'- cagUCGUCGuCGCugGGGACGUAGUG- -5'
29361 5' -57.8 NC_006150.1 + 88690 0.8 0.207386
Target:  5'- uUCAGCAGCAGCuGCUCCUGCuacCACa -3'
miRNA:   3'- cAGUCGUCGUCGcUGGGGACGua-GUG- -5'
29361 5' -57.8 NC_006150.1 + 130529 0.84 0.110689
Target:  5'- -gCAGCAGCAGCGGCUCCugcUGCAUCAUc -3'
miRNA:   3'- caGUCGUCGUCGCUGGGG---ACGUAGUG- -5'
29361 5' -57.8 NC_006150.1 + 216422 1.08 0.002617
Target:  5'- aGUCAGCAGCAGCGACCCCUGCAUCACc -3'
miRNA:   3'- -CAGUCGUCGUCGCUGGGGACGUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.