miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29362 5' -54 NC_006150.1 + 181256 0.66 0.980223
Target:  5'- gUCgUGGUGCcgagGCGGAcGCggagGGCGg -3'
miRNA:   3'- gAG-ACCACGuacaCGCCUuUGa---CCGC- -5'
29362 5' -54 NC_006150.1 + 92365 0.66 0.980223
Target:  5'- gUCUGG-GCcgGgcgGUGGGGAUucgGGCGa -3'
miRNA:   3'- gAGACCaCGuaCa--CGCCUUUGa--CCGC- -5'
29362 5' -54 NC_006150.1 + 220931 0.66 0.980007
Target:  5'- -gCUGGUGCGgagaccugcGUaGCGGAGAUgcugccaggagugUGGCGa -3'
miRNA:   3'- gaGACCACGUa--------CA-CGCCUUUG-------------ACCGC- -5'
29362 5' -54 NC_006150.1 + 156895 0.66 0.977986
Target:  5'- -gCUGGUGgagGUGUGUGGAugggggauACUGGgGa -3'
miRNA:   3'- gaGACCACg--UACACGCCUu-------UGACCgC- -5'
29362 5' -54 NC_006150.1 + 183464 0.66 0.977281
Target:  5'- gCUUUGGUGUuggguuggauguagaGUGCGGAuuGCUGGgGc -3'
miRNA:   3'- -GAGACCACGua-------------CACGCCUu-UGACCgC- -5'
29362 5' -54 NC_006150.1 + 154179 0.67 0.967158
Target:  5'- -gCUGGuUGCAgcUGUGCuGGugucGCUGGUGg -3'
miRNA:   3'- gaGACC-ACGU--ACACG-CCuu--UGACCGC- -5'
29362 5' -54 NC_006150.1 + 92889 0.67 0.961919
Target:  5'- uCUUUGGUGCGUGagccuuccagccgcuUGaCGGAAACgcagugggGGCu -3'
miRNA:   3'- -GAGACCACGUAC---------------AC-GCCUUUGa-------CCGc -5'
29362 5' -54 NC_006150.1 + 181872 0.67 0.953016
Target:  5'- ---cGG-GCAUGgGCGGGAAgaGGCGu -3'
miRNA:   3'- gagaCCaCGUACaCGCCUUUgaCCGC- -5'
29362 5' -54 NC_006150.1 + 106144 0.68 0.930236
Target:  5'- cCUUUGcaGCGUGggGCGGAGACggGGCa -3'
miRNA:   3'- -GAGACcaCGUACa-CGCCUUUGa-CCGc -5'
29362 5' -54 NC_006150.1 + 134484 0.68 0.930236
Target:  5'- cCUCUGGUuuuuugGCGUGgGgGGAcGCaUGGCGa -3'
miRNA:   3'- -GAGACCA------CGUACaCgCCUuUG-ACCGC- -5'
29362 5' -54 NC_006150.1 + 20622 0.69 0.913742
Target:  5'- aUCUGGUGCuaAUGUGCgacuuGGAGACUcaucGCGc -3'
miRNA:   3'- gAGACCACG--UACACG-----CCUUUGAc---CGC- -5'
29362 5' -54 NC_006150.1 + 216623 0.7 0.859646
Target:  5'- cCUgUGGUGUAUcUGCGGAcACUGGa- -3'
miRNA:   3'- -GAgACCACGUAcACGCCUuUGACCgc -5'
29362 5' -54 NC_006150.1 + 217280 0.76 0.585115
Target:  5'- cCUgUGGUGCAacUGCGGGGACUGGaCa -3'
miRNA:   3'- -GAgACCACGUacACGCCUUUGACC-Gc -5'
29362 5' -54 NC_006150.1 + 184084 0.83 0.25832
Target:  5'- gUgUGGUGUcaGUGCGGGGACUGGCGg -3'
miRNA:   3'- gAgACCACGuaCACGCCUUUGACCGC- -5'
29362 5' -54 NC_006150.1 + 217412 1.1 0.005234
Target:  5'- cCUCUGGUGCAUGUGCGGAAACUGGCGg -3'
miRNA:   3'- -GAGACCACGUACACGCCUUUGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.