Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29362 | 5' | -54 | NC_006150.1 | + | 217412 | 1.1 | 0.005234 |
Target: 5'- cCUCUGGUGCAUGUGCGGAAACUGGCGg -3' miRNA: 3'- -GAGACCACGUACACGCCUUUGACCGC- -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 184084 | 0.83 | 0.25832 |
Target: 5'- gUgUGGUGUcaGUGCGGGGACUGGCGg -3' miRNA: 3'- gAgACCACGuaCACGCCUUUGACCGC- -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 217280 | 0.76 | 0.585115 |
Target: 5'- cCUgUGGUGCAacUGCGGGGACUGGaCa -3' miRNA: 3'- -GAgACCACGUacACGCCUUUGACC-Gc -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 216623 | 0.7 | 0.859646 |
Target: 5'- cCUgUGGUGUAUcUGCGGAcACUGGa- -3' miRNA: 3'- -GAgACCACGUAcACGCCUuUGACCgc -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 20622 | 0.69 | 0.913742 |
Target: 5'- aUCUGGUGCuaAUGUGCgacuuGGAGACUcaucGCGc -3' miRNA: 3'- gAGACCACG--UACACG-----CCUUUGAc---CGC- -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 106144 | 0.68 | 0.930236 |
Target: 5'- cCUUUGcaGCGUGggGCGGAGACggGGCa -3' miRNA: 3'- -GAGACcaCGUACa-CGCCUUUGa-CCGc -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 134484 | 0.68 | 0.930236 |
Target: 5'- cCUCUGGUuuuuugGCGUGgGgGGAcGCaUGGCGa -3' miRNA: 3'- -GAGACCA------CGUACaCgCCUuUG-ACCGC- -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 181872 | 0.67 | 0.953016 |
Target: 5'- ---cGG-GCAUGgGCGGGAAgaGGCGu -3' miRNA: 3'- gagaCCaCGUACaCGCCUUUgaCCGC- -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 92889 | 0.67 | 0.961919 |
Target: 5'- uCUUUGGUGCGUGagccuuccagccgcuUGaCGGAAACgcagugggGGCu -3' miRNA: 3'- -GAGACCACGUAC---------------AC-GCCUUUGa-------CCGc -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 154179 | 0.67 | 0.967158 |
Target: 5'- -gCUGGuUGCAgcUGUGCuGGugucGCUGGUGg -3' miRNA: 3'- gaGACC-ACGU--ACACG-CCuu--UGACCGC- -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 183464 | 0.66 | 0.977281 |
Target: 5'- gCUUUGGUGUuggguuggauguagaGUGCGGAuuGCUGGgGc -3' miRNA: 3'- -GAGACCACGua-------------CACGCCUu-UGACCgC- -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 156895 | 0.66 | 0.977986 |
Target: 5'- -gCUGGUGgagGUGUGUGGAugggggauACUGGgGa -3' miRNA: 3'- gaGACCACg--UACACGCCUu-------UGACCgC- -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 220931 | 0.66 | 0.980007 |
Target: 5'- -gCUGGUGCGgagaccugcGUaGCGGAGAUgcugccaggagugUGGCGa -3' miRNA: 3'- gaGACCACGUa--------CA-CGCCUUUG-------------ACCGC- -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 92365 | 0.66 | 0.980223 |
Target: 5'- gUCUGG-GCcgGgcgGUGGGGAUucgGGCGa -3' miRNA: 3'- gAGACCaCGuaCa--CGCCUUUGa--CCGC- -5' |
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29362 | 5' | -54 | NC_006150.1 | + | 181256 | 0.66 | 0.980223 |
Target: 5'- gUCgUGGUGCcgagGCGGAcGCggagGGCGg -3' miRNA: 3'- gAG-ACCACGuacaCGCCUuUGa---CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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