miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29363 3' -55.9 NC_006150.1 + 217878 0.66 0.954136
Target:  5'- cGUUCCCu--CCGauCCUGAGUCcGAGUa -3'
miRNA:   3'- aUAAGGGcacGGC--GGACUCAGaCUCG- -5'
29363 3' -55.9 NC_006150.1 + 176286 0.66 0.954136
Target:  5'- --gUUCUGUGUCGUCUGAGU---GGCg -3'
miRNA:   3'- auaAGGGCACGGCGGACUCAgacUCG- -5'
29363 3' -55.9 NC_006150.1 + 130284 0.66 0.953748
Target:  5'- --cUCaCGUGCCGCCacucgcaUGAGUUgcaagGAGUg -3'
miRNA:   3'- auaAGgGCACGGCGG-------ACUCAGa----CUCG- -5'
29363 3' -55.9 NC_006150.1 + 64779 0.66 0.936838
Target:  5'- --gUCCggcaUGUGCCGCCUccGAGUugCUGuAGCu -3'
miRNA:   3'- auaAGG----GCACGGCGGA--CUCA--GAC-UCG- -5'
29363 3' -55.9 NC_006150.1 + 88525 0.67 0.926811
Target:  5'- --cUUCCGUGCCGCCc-AG-CcGAGCg -3'
miRNA:   3'- auaAGGGCACGGCGGacUCaGaCUCG- -5'
29363 3' -55.9 NC_006150.1 + 171413 0.68 0.870377
Target:  5'- cAUUCCCGUGCCaCCaccGUCUGAa- -3'
miRNA:   3'- aUAAGGGCACGGcGGacuCAGACUcg -5'
29363 3' -55.9 NC_006150.1 + 167668 0.68 0.870377
Target:  5'- --aUCCCGcgUGCUGCaaGGGUUUGGGUu -3'
miRNA:   3'- auaAGGGC--ACGGCGgaCUCAGACUCG- -5'
29363 3' -55.9 NC_006150.1 + 171922 0.69 0.823301
Target:  5'- cGUUCUCGccGCCGUCaUGAGuUCUGAGg -3'
miRNA:   3'- aUAAGGGCa-CGGCGG-ACUC-AGACUCg -5'
29363 3' -55.9 NC_006150.1 + 88006 0.7 0.779384
Target:  5'- --cUCCCcccugGCCGCCUGGGggaugGGGCg -3'
miRNA:   3'- auaAGGGca---CGGCGGACUCaga--CUCG- -5'
29363 3' -55.9 NC_006150.1 + 70039 0.74 0.572562
Target:  5'- --cUCCCGcucuggugcuuaUGUCGCCUGAaGUgUGAGCg -3'
miRNA:   3'- auaAGGGC------------ACGGCGGACU-CAgACUCG- -5'
29363 3' -55.9 NC_006150.1 + 217590 1.11 0.002997
Target:  5'- aUAUUCCCGUGCCGCCUGAGUCUGAGCg -3'
miRNA:   3'- -AUAAGGGCACGGCGGACUCAGACUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.