Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29363 | 5' | -55.8 | NC_006150.1 | + | 183588 | 0.66 | 0.946649 |
|
Target: 5'- -gACggCGGACUgggUAGGAggcggUGGAGGGGGg -3' miRNA: 3'- caUGa-GCCUGA---GUCCUa----GCCUCCCUU- -5' |
|||||||
| 29363 | 5' | -55.8 | NC_006150.1 | + | 27100 | 0.66 | 0.946649 |
|
Target: 5'- -cACUugCGGuACccgCGGGAUCGGGGGGu- -3' miRNA: 3'- caUGA--GCC-UGa--GUCCUAGCCUCCCuu -5' |
|||||||
| 29363 | 5' | -55.8 | NC_006150.1 | + | 68585 | 0.66 | 0.946219 |
|
Target: 5'- -gACUCGGGCacgucuaUCaAGGGUaCGGuGGGGAa -3' miRNA: 3'- caUGAGCCUG-------AG-UCCUA-GCCuCCCUU- -5' |
|||||||
| 29363 | 5' | -55.8 | NC_006150.1 | + | 146471 | 0.66 | 0.937628 |
|
Target: 5'- aGUuCUCGGAUgucagUCcGGAUCGGAGGa-- -3' miRNA: 3'- -CAuGAGCCUG-----AGuCCUAGCCUCCcuu -5' |
|||||||
| 29363 | 5' | -55.8 | NC_006150.1 | + | 183671 | 0.66 | 0.937628 |
|
Target: 5'- -aACUCGGGucgucuUUUGGGAggaaCGGGGGGAGg -3' miRNA: 3'- caUGAGCCU------GAGUCCUa---GCCUCCCUU- -5' |
|||||||
| 29363 | 5' | -55.8 | NC_006150.1 | + | 157423 | 0.67 | 0.927686 |
|
Target: 5'- -gGCUUGGACUUGGGuUUGGGGGu-- -3' miRNA: 3'- caUGAGCCUGAGUCCuAGCCUCCcuu -5' |
|||||||
| 29363 | 5' | -55.8 | NC_006150.1 | + | 71859 | 0.67 | 0.927686 |
|
Target: 5'- -aGCUCauGGACauuaaCGGGAuaUUGGAGGGAAa -3' miRNA: 3'- caUGAG--CCUGa----GUCCU--AGCCUCCCUU- -5' |
|||||||
| 29363 | 5' | -55.8 | NC_006150.1 | + | 169374 | 0.67 | 0.916817 |
|
Target: 5'- ---aUCGGGCUC-GGA-CGGAGGGc- -3' miRNA: 3'- caugAGCCUGAGuCCUaGCCUCCCuu -5' |
|||||||
| 29363 | 5' | -55.8 | NC_006150.1 | + | 217629 | 1.06 | 0.006682 |
|
Target: 5'- cGUACUCGGACUCAGGAUCGGAGGGAAc -3' miRNA: 3'- -CAUGAGCCUGAGUCCUAGCCUCCCUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home