Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29365 | 3' | -51 | NC_006150.1 | + | 207763 | 0.66 | 0.996933 |
Target: 5'- gCAAGCGUGua-GUgCUGAUgGGGCGGu -3' miRNA: 3'- -GUUUGUAUuccCAgGACUAgCCCGUC- -5' |
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29365 | 3' | -51 | NC_006150.1 | + | 445 | 0.67 | 0.995785 |
Target: 5'- gAGGCuggagGGGGGcCCgggGGUCGcGGCGGg -3' miRNA: 3'- gUUUGua---UUCCCaGGa--CUAGC-CCGUC- -5' |
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29365 | 3' | -51 | NC_006150.1 | + | 1024 | 0.67 | 0.995785 |
Target: 5'- gCAGGCAggcGAGGGUggCCUGAcgcuaggCGGcGCAGc -3' miRNA: 3'- -GUUUGUa--UUCCCA--GGACUa------GCC-CGUC- -5' |
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29365 | 3' | -51 | NC_006150.1 | + | 174697 | 0.67 | 0.993428 |
Target: 5'- -cAGCAUu-GGGUUCcggGGUCGGuGCAGg -3' miRNA: 3'- guUUGUAuuCCCAGGa--CUAGCC-CGUC- -5' |
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29365 | 3' | -51 | NC_006150.1 | + | 171485 | 0.68 | 0.99134 |
Target: 5'- gAGAUGUAAGGGUUCUGAacuUUuGGCAa -3' miRNA: 3'- gUUUGUAUUCCCAGGACU---AGcCCGUc -5' |
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29365 | 3' | -51 | NC_006150.1 | + | 12946 | 0.73 | 0.883977 |
Target: 5'- uCGGGCGUGGGGGUgCUGAcUCGaccGGCGGu -3' miRNA: 3'- -GUUUGUAUUCCCAgGACU-AGC---CCGUC- -5' |
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29365 | 3' | -51 | NC_006150.1 | + | 219451 | 1.08 | 0.013273 |
Target: 5'- cCAAACAUAAGGGUCCUGAUCGGGCAGc -3' miRNA: 3'- -GUUUGUAUUCCCAGGACUAGCCCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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