miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29365 5' -59.1 NC_006150.1 + 69308 0.66 0.836035
Target:  5'- cAGCUGUCUcGAuacucUCcGGACUGGCaGCg- -3'
miRNA:   3'- -UCGACGGA-CU-----AGuCCUGACCGcCGac -5'
29365 5' -59.1 NC_006150.1 + 120904 0.66 0.836035
Target:  5'- aAGCcGCCUuGUCGGGACgUGuaGGUUGu -3'
miRNA:   3'- -UCGaCGGAcUAGUCCUG-ACcgCCGAC- -5'
29365 5' -59.1 NC_006150.1 + 321 0.66 0.819673
Target:  5'- cGGCUGCC----CGGGGUUGGCGGuCUGc -3'
miRNA:   3'- -UCGACGGacuaGUCCUGACCGCC-GAC- -5'
29365 5' -59.1 NC_006150.1 + 203008 0.67 0.802668
Target:  5'- uGGCUGCUguUGAggCGGGGaggguggUGGCGGCg- -3'
miRNA:   3'- -UCGACGG--ACUa-GUCCUg------ACCGCCGac -5'
29365 5' -59.1 NC_006150.1 + 181260 0.67 0.792181
Target:  5'- uGgUGCCgaggcggacgcgGAgggCGGGAgaGGCGGCUGc -3'
miRNA:   3'- uCgACGGa-----------CUa--GUCCUgaCCGCCGAC- -5'
29365 5' -59.1 NC_006150.1 + 103955 0.67 0.78508
Target:  5'- cGCUGCUcuucauguuuaUGAUCcuGGAUcgcaUGGCGGCUu -3'
miRNA:   3'- uCGACGG-----------ACUAGu-CCUG----ACCGCCGAc -5'
29365 5' -59.1 NC_006150.1 + 183076 0.68 0.700481
Target:  5'- gAGuCUGCCaUGGUU-GGAgaGGUGGCUGu -3'
miRNA:   3'- -UC-GACGG-ACUAGuCCUgaCCGCCGAC- -5'
29365 5' -59.1 NC_006150.1 + 88014 0.68 0.700481
Target:  5'- uGGCcGCCUGG--GGGAUggGGCGGCg- -3'
miRNA:   3'- -UCGaCGGACUagUCCUGa-CCGCCGac -5'
29365 5' -59.1 NC_006150.1 + 111494 0.7 0.611444
Target:  5'- uGCUGCUg---CuGG-CUGGCGGCUGa -3'
miRNA:   3'- uCGACGGacuaGuCCuGACCGCCGAC- -5'
29365 5' -59.1 NC_006150.1 + 138724 0.77 0.274396
Target:  5'- uGGCUGCCUGGUCAu--UUGGCGGCg- -3'
miRNA:   3'- -UCGACGGACUAGUccuGACCGCCGac -5'
29365 5' -59.1 NC_006150.1 + 88520 0.77 0.256046
Target:  5'- cGCagUGCUgGAUCGGGACaGGCGGCUGc -3'
miRNA:   3'- uCG--ACGGaCUAGUCCUGaCCGCCGAC- -5'
29365 5' -59.1 NC_006150.1 + 219486 1.07 0.002541
Target:  5'- cAGCUGCCUGAUCAGGACUGGCGGCUGc -3'
miRNA:   3'- -UCGACGGACUAGUCCUGACCGCCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.