miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 25890 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 25959 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 62859 0.68 0.674084
Target:  5'- -aUCCUCUcCCCCAUCccUCCCCCn---- -3'
miRNA:   3'- agAGGAGA-GGGGUAG--AGGGGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26134 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26099 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26064 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26029 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 25994 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 12647 0.68 0.664204
Target:  5'- aCUCCUC-CCacaCCAg--CCCCCGcCGCc -3'
miRNA:   3'- aGAGGAGaGG---GGUagaGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 58557 0.68 0.664204
Target:  5'- nUCUCCUCUUCgCCGcCgccgCCCgCCGgcgUCGCg -3'
miRNA:   3'- -AGAGGAGAGG-GGUaGa---GGG-GGC---AGCG- -5'
29366 3' -59.7 NC_006151.1 + 109147 0.68 0.664204
Target:  5'- cCUCCgUCUCCaCAUC-CCgCCGcCGCa -3'
miRNA:   3'- aGAGG-AGAGGgGUAGaGGgGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 140710 0.68 0.664204
Target:  5'- nCUCCUCU-CCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAgGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 40621 0.68 0.664204
Target:  5'- uUCUCCUcCUCCCgCGg-UCCCCCGgUCc- -3'
miRNA:   3'- -AGAGGA-GAGGG-GUagAGGGGGC-AGcg -5'
29366 3' -59.7 NC_006151.1 + 6036 0.68 0.664204
Target:  5'- -gUCCUcCUCCUCGUCUUCgUCGUCuaGCa -3'
miRNA:   3'- agAGGA-GAGGGGUAGAGGgGGCAG--CG- -5'
29366 3' -59.7 NC_006151.1 + 93331 0.68 0.654301
Target:  5'- cUCUCCcaUCCCCGUUcccgUCCCaCCcUCGCc -3'
miRNA:   3'- -AGAGGagAGGGGUAG----AGGG-GGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 36770 0.68 0.650335
Target:  5'- gUCUCCUCcaaCCCCAacuccaaCUCCaacuccaccaccaCCGUCGCc -3'
miRNA:   3'- -AGAGGAGa--GGGGUa------GAGGg------------GGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 47910 0.68 0.644381
Target:  5'- --gCCUCgaugcgCCCCAUCgCgCCCCGUucCGCu -3'
miRNA:   3'- agaGGAGa-----GGGGUAGaG-GGGGCA--GCG- -5'
29366 3' -59.7 NC_006151.1 + 137636 0.68 0.644381
Target:  5'- cCUCCgC-CCUCGUCcgcgCCCCCGUCccgGCg -3'
miRNA:   3'- aGAGGaGaGGGGUAGa---GGGGGCAG---CG- -5'
29366 3' -59.7 NC_006151.1 + 46772 0.68 0.639417
Target:  5'- gCUCCUC-CCCCucgucuucaccCUCCuccucgaugcggcgCCCGUCGCc -3'
miRNA:   3'- aGAGGAGaGGGGua---------GAGG--------------GGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 14311 0.68 0.634452
Target:  5'- cCUCC-CUCCCCA----CCCCG-CGCg -3'
miRNA:   3'- aGAGGaGAGGGGUagagGGGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.