Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29366 | 5' | -52.8 | NC_006151.1 | + | 10229 | 0.73 | 0.710636 |
Target: 5'- cUGCG-GACGCGGAggggggCGAgGGGACa -3' miRNA: 3'- uGCGCuCUGCGCCUaua---GCUaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 122958 | 0.75 | 0.627639 |
Target: 5'- cGCGgGGGGCGCGGAcgccggCGAcgGGGGCg -3' miRNA: 3'- -UGCgCUCUGCGCCUaua---GCUa-UCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 33963 | 0.75 | 0.617189 |
Target: 5'- -gGCGGGACGCGGcgcccgCGcgGGGACa -3' miRNA: 3'- ugCGCUCUGCGCCuaua--GCuaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 27442 | 0.75 | 0.596331 |
Target: 5'- gGCGCGgcGGACGCGGuggGUCG--GGGGCg -3' miRNA: 3'- -UGCGC--UCUGCGCCua-UAGCuaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 27296 | 0.76 | 0.534642 |
Target: 5'- cGCGCuuggGGGGCGUGGggGUCGAggcggGGGACg -3' miRNA: 3'- -UGCG----CUCUGCGCCuaUAGCUa----UCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 34619 | 0.81 | 0.313335 |
Target: 5'- aGCGCGAGGCGCGGGUGgggCGAccgcgGGGGu -3' miRNA: 3'- -UGCGCUCUGCGCCUAUa--GCUa----UCCUg -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 105795 | 0.83 | 0.246419 |
Target: 5'- uGCGCGAGGCGCGGAg--CGAcgcGGACg -3' miRNA: 3'- -UGCGCUCUGCGCCUauaGCUau-CCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 141015 | 1.09 | 0.005432 |
Target: 5'- cACGCGAGACGCGGAUAUCGAUAGGACu -3' miRNA: 3'- -UGCGCUCUGCGCCUAUAGCUAUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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