miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 54293 0.69 0.448996
Target:  5'- cGCuCCACCgagGCCGCC----GUGCGGCa -3'
miRNA:   3'- -CG-GGUGGa--CGGCGGacugCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 52444 0.69 0.448996
Target:  5'- cGCagCGCC-GCCGCCgUGACG-GCGGCc -3'
miRNA:   3'- -CGg-GUGGaCGGCGG-ACUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 17962 0.69 0.44721
Target:  5'- cGCCCGCCUGCCGgCgucccacGCGGCg -3'
miRNA:   3'- -CGGGUGGACGGCgGacugca-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 125386 0.69 0.457983
Target:  5'- gGCCgCAUCgcgGCCGCCUG--GUGCgAGCUg -3'
miRNA:   3'- -CGG-GUGGa--CGGCGGACugCACG-UCGA- -5'
29367 5' -61.1 NC_006151.1 + 77013 0.69 0.466154
Target:  5'- gGCCCGCgaGCCguggagcGCCagGACGagGCAGCa -3'
miRNA:   3'- -CGGGUGgaCGG-------CGGa-CUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 49145 0.69 0.494855
Target:  5'- cGCCCGCCcacgGCUGCCUGGag-GCcugGGCg -3'
miRNA:   3'- -CGGGUGGa---CGGCGGACUgcaCG---UCGa -5'
29367 5' -61.1 NC_006151.1 + 106980 0.69 0.494855
Target:  5'- cCCCAUCgagaacGCgUGCCUGGCGccGCAGCUg -3'
miRNA:   3'- cGGGUGGa-----CG-GCGGACUGCa-CGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 15915 0.69 0.485506
Target:  5'- gGCCCGCC-GCCGCCc--CGUGaGGCg -3'
miRNA:   3'- -CGGGUGGaCGGCGGacuGCACgUCGa -5'
29367 5' -61.1 NC_006151.1 + 95915 0.69 0.485506
Target:  5'- uGCCgCGCgUGCaguCGCCcgagGGCGUGCGGUUg -3'
miRNA:   3'- -CGG-GUGgACG---GCGGa---CUGCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 98282 0.69 0.476242
Target:  5'- gGCCgACCacGCCGUCgccacgGugGUGCAGUc -3'
miRNA:   3'- -CGGgUGGa-CGGCGGa-----CugCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 32937 0.69 0.467067
Target:  5'- cCCCGCUc-CCGCCUGugGUGCcGUg -3'
miRNA:   3'- cGGGUGGacGGCGGACugCACGuCGa -5'
29367 5' -61.1 NC_006151.1 + 122550 0.69 0.467067
Target:  5'- gGCCCGCCUcGCggCGCCUGuACGccgugagcgagcUGCAGUUu -3'
miRNA:   3'- -CGGGUGGA-CG--GCGGAC-UGC------------ACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 101732 0.7 0.405581
Target:  5'- aCCCGauggcCCUGCCGCCgGACccgGCGGCc -3'
miRNA:   3'- cGGGU-----GGACGGCGGaCUGca-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 106183 0.7 0.414053
Target:  5'- cGCgCACCcGCCGCUggagccGGCGgUGCGGCUc -3'
miRNA:   3'- -CGgGUGGaCGGCGGa-----CUGC-ACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 38068 0.7 0.422632
Target:  5'- gGCCCGCCUGCC-UCgagGAgGUGaCGGCc -3'
miRNA:   3'- -CGGGUGGACGGcGGa--CUgCAC-GUCGa -5'
29367 5' -61.1 NC_006151.1 + 109303 0.7 0.422632
Target:  5'- -gCgGCCcGCCGCCUcGGCG-GCAGCa -3'
miRNA:   3'- cgGgUGGaCGGCGGA-CUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 109161 0.7 0.422632
Target:  5'- uCCCGCC-GCCGCagccUGUGCAGCUg -3'
miRNA:   3'- cGGGUGGaCGGCGgacuGCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 21571 0.7 0.431317
Target:  5'- aGCCCGCCgaggGCCGCgcggggucgaUGGCGUaCGGCg -3'
miRNA:   3'- -CGGGUGGa---CGGCGg---------ACUGCAcGUCGa -5'
29367 5' -61.1 NC_006151.1 + 57609 0.7 0.440106
Target:  5'- gGCCUcgGCCgcgGCCGCCUcGACG-GCGcGCg -3'
miRNA:   3'- -CGGG--UGGa--CGGCGGA-CUGCaCGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 58402 0.7 0.405581
Target:  5'- aGCCgGCCaugGCgCGCagcugGGCGUGCGGCa -3'
miRNA:   3'- -CGGgUGGa--CG-GCGga---CUGCACGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.