Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 29367 | 5' | -61.1 | NC_006151.1 | + | 86088 | 0.66 | 0.632007 |
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Target: 5'- cGCgCCGCC-GCCGCCauggggcccgUGuACGUGUccGGCUa -3' miRNA: 3'- -CG-GGUGGaCGGCGG----------AC-UGCACG--UCGA- -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 112833 | 0.66 | 0.632007 |
|
Target: 5'- cGCCacgCGCgUGCucaCGCUcgugGACGUGCAGCg -3' miRNA: 3'- -CGG---GUGgACG---GCGGa---CUGCACGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 104250 | 0.66 | 0.641019 |
|
Target: 5'- cCCgCACCUGCCcgagaacGCC-GGCGcgGCGGCg -3' miRNA: 3'- cGG-GUGGACGG-------CGGaCUGCa-CGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 73578 | 0.66 | 0.64202 |
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Target: 5'- cGCaCCACCgucaggGCgaaGCC-GGgGUGCAGCUg -3' miRNA: 3'- -CG-GGUGGa-----CGg--CGGaCUgCACGUCGA- -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 38790 | 0.66 | 0.64202 |
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Target: 5'- cGCCCGCUcgggcccaUGCCcgagcaccccgcGCCcGACG-GCGGCUu -3' miRNA: 3'- -CGGGUGG--------ACGG------------CGGaCUGCaCGUCGA- -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 61987 | 0.66 | 0.621995 |
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Target: 5'- uGCCaCGCCUGCaaggGCacgggUGACGUGCGcGCc -3' miRNA: 3'- -CGG-GUGGACGg---CGg----ACUGCACGU-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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