Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29367 | 5' | -61.1 | NC_006151.1 | + | 110182 | 0.66 | 0.671982 |
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Target: 5'- -gCCGCgUGCCGCCUGauaGCGcGCcGCc -3' miRNA: 3'- cgGGUGgACGGCGGAC---UGCaCGuCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 122412 | 0.66 | 0.671982 |
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Target: 5'- cGCUCGCCgccguggacGCCGCCgaggcccgggaGGCGgagGCGGCg -3' miRNA: 3'- -CGGGUGGa--------CGGCGGa----------CUGCa--CGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 37017 | 0.66 | 0.671982 |
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Target: 5'- gGCCC-CC-GCCGCCgc-CGcGCGGCg -3' miRNA: 3'- -CGGGuGGaCGGCGGacuGCaCGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 109509 | 0.66 | 0.671982 |
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Target: 5'- cUCCGCCgcUGCCGCCgcaGcCGUcucaGCAGCg -3' miRNA: 3'- cGGGUGG--ACGGCGGa--CuGCA----CGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 120739 | 0.66 | 0.671982 |
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Target: 5'- cGCCCgcgggACCcgGCCgcgucaugGCCUGG-GUGCGGCg -3' miRNA: 3'- -CGGG-----UGGa-CGG--------CGGACUgCACGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 11686 | 0.66 | 0.671982 |
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Target: 5'- cGCCCGaCgggGCCGCggGacggcGCGUGCGGCg -3' miRNA: 3'- -CGGGUgGa--CGGCGgaC-----UGCACGUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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