Results 101 - 120 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 5' | -61.1 | NC_006151.1 | + | 50675 | 0.66 | 0.621995 |
Target: 5'- gGCCgCACCcccgcGCCGCC--GCG-GCAGCg -3' miRNA: 3'- -CGG-GUGGa----CGGCGGacUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 49594 | 0.67 | 0.562316 |
Target: 5'- cGCCCcggccagcGCgCUGCCGguCCUGGCgGUGCuGCg -3' miRNA: 3'- -CGGG--------UG-GACGGC--GGACUG-CACGuCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 49145 | 0.69 | 0.494855 |
Target: 5'- cGCCCGCCcacgGCUGCCUGGag-GCcugGGCg -3' miRNA: 3'- -CGGGUGGa---CGGCGGACUgcaCG---UCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 48574 | 0.69 | 0.457983 |
Target: 5'- aCCCugcgGCCUGCCGCCcGGgGUGC-GCc -3' miRNA: 3'- cGGG----UGGACGGCGGaCUgCACGuCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 45841 | 0.66 | 0.662016 |
Target: 5'- cCCCAUCUGCCug--GACGUcGCGGCc -3' miRNA: 3'- cGGGUGGACGGcggaCUGCA-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 44169 | 0.66 | 0.662016 |
Target: 5'- uGCCCcugggagcACCgcggGUCGCCguccgGGCG-GCGGCg -3' miRNA: 3'- -CGGG--------UGGa---CGGCGGa----CUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 39018 | 0.74 | 0.254494 |
Target: 5'- cGCuCCGCCgccgcGCCGCCUGGa-UGCGGCa -3' miRNA: 3'- -CG-GGUGGa----CGGCGGACUgcACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 38790 | 0.66 | 0.64202 |
Target: 5'- cGCCCGCUcgggcccaUGCCcgagcaccccgcGCCcGACG-GCGGCUu -3' miRNA: 3'- -CGGGUGG--------ACGG------------CGGaCUGCaCGUCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 38332 | 0.68 | 0.523371 |
Target: 5'- cGCCCgGCCUGCCcccGCuCUGGCccgaGCAGCc -3' miRNA: 3'- -CGGG-UGGACGG---CG-GACUGca--CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 38225 | 0.71 | 0.388971 |
Target: 5'- cGCCCGCgagGCCGCCUGgaccuACGccGCGGCc -3' miRNA: 3'- -CGGGUGga-CGGCGGAC-----UGCa-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 38068 | 0.7 | 0.422632 |
Target: 5'- gGCCCGCCUGCC-UCgagGAgGUGaCGGCc -3' miRNA: 3'- -CGGGUGGACGGcGGa--CUgCAC-GUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 37017 | 0.66 | 0.671982 |
Target: 5'- gGCCC-CC-GCCGCCgc-CGcGCGGCg -3' miRNA: 3'- -CGGGuGGaCGGCGGacuGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 36717 | 0.67 | 0.560348 |
Target: 5'- aGCCCGCC-GCCGCgaGGCGgcucgauccucgGCcGCUu -3' miRNA: 3'- -CGGGUGGaCGGCGgaCUGCa-----------CGuCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 32937 | 0.69 | 0.467067 |
Target: 5'- cCCCGCUc-CCGCCUGugGUGCcGUg -3' miRNA: 3'- cGGGUGGacGGCGGACugCACGuCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 21571 | 0.7 | 0.431317 |
Target: 5'- aGCCCGCCgaggGCCGCgcggggucgaUGGCGUaCGGCg -3' miRNA: 3'- -CGGGUGGa---CGGCGg---------ACUGCAcGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 20307 | 0.68 | 0.504285 |
Target: 5'- cGCCCGCC-GUgGCgUUGGCG-GCGGCg -3' miRNA: 3'- -CGGGUGGaCGgCG-GACUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 19342 | 0.66 | 0.662016 |
Target: 5'- gGCCCGCg-GCC-CCgagGcguCGUGCAGCg -3' miRNA: 3'- -CGGGUGgaCGGcGGa--Cu--GCACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 17962 | 0.69 | 0.44721 |
Target: 5'- cGCCCGCCUGCCGgCgucccacGCGGCg -3' miRNA: 3'- -CGGGUGGACGGCgGacugca-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 15915 | 0.69 | 0.485506 |
Target: 5'- gGCCCGCC-GCCGCCc--CGUGaGGCg -3' miRNA: 3'- -CGGGUGGaCGGCGGacuGCACgUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 15079 | 0.67 | 0.59203 |
Target: 5'- gGCCC-CCUGgCGCCccGACacGCGGCg -3' miRNA: 3'- -CGGGuGGACgGCGGa-CUGcaCGUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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