Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29367 | 5' | -61.1 | NC_006151.1 | + | 11686 | 0.66 | 0.671982 |
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Target: 5'- cGCCCGaCgggGCCGCggGacggcGCGUGCGGCg -3' miRNA: 3'- -CGGGUgGa--CGGCGgaC-----UGCACGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 11041 | 0.68 | 0.512838 |
|
Target: 5'- gGCCgGCCggggGCCcgGCCUGGacgcgggccacacUGUGCGGCg -3' miRNA: 3'- -CGGgUGGa---CGG--CGGACU-------------GCACGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 9037 | 0.67 | 0.572182 |
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Target: 5'- cGCCCGCCggGgCGCCccGCGUGCuccgggGGCg -3' miRNA: 3'- -CGGGUGGa-CgGCGGacUGCACG------UCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 7101 | 0.68 | 0.523371 |
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Target: 5'- gGCCCGCuCUGCgGCCaucuUGGCc-GCGGCg -3' miRNA: 3'- -CGGGUG-GACGgCGG----ACUGcaCGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 5626 | 0.68 | 0.546629 |
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Target: 5'- gGCgCCGCC-GCCGCCgGGCGccgagaccggcccgGCGGCg -3' miRNA: 3'- -CG-GGUGGaCGGCGGaCUGCa-------------CGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 3875 | 0.71 | 0.349444 |
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Target: 5'- cGCCCGCC-GCCGCC-GGCGccgGC-GCUg -3' miRNA: 3'- -CGGGUGGaCGGCGGaCUGCa--CGuCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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