Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 5' | -61.1 | NC_006151.1 | + | 84915 | 0.67 | 0.582089 |
Target: 5'- cGCCgCGCgCggcGCCGCCUccGGCGUGCucuucGGCa -3' miRNA: 3'- -CGG-GUG-Ga--CGGCGGA--CUGCACG-----UCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 63988 | 0.67 | 0.582089 |
Target: 5'- aGCgCAUCU-CCGUCUG-CGUGCGGUg -3' miRNA: 3'- -CGgGUGGAcGGCGGACuGCACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 122350 | 0.67 | 0.582089 |
Target: 5'- gGCCaagaACCUGCCGC---ACGUGCAcggGCUc -3' miRNA: 3'- -CGGg---UGGACGGCGgacUGCACGU---CGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 85135 | 0.67 | 0.582089 |
Target: 5'- uGCCugCACCUGgUGCaccGCGUGCGGCa -3' miRNA: 3'- -CGG--GUGGACgGCGgacUGCACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 92045 | 0.67 | 0.572182 |
Target: 5'- cGCCCgcuGCCUGCugCGCCUGcuGCGcaUGCuGCa -3' miRNA: 3'- -CGGG---UGGACG--GCGGAC--UGC--ACGuCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 57870 | 0.67 | 0.572182 |
Target: 5'- cGCgCGCCccGCCGgCaGACGUcGCAGCg -3' miRNA: 3'- -CGgGUGGa-CGGCgGaCUGCA-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 9037 | 0.67 | 0.572182 |
Target: 5'- cGCCCGCCggGgCGCCccGCGUGCuccgggGGCg -3' miRNA: 3'- -CGGGUGGa-CgGCGGacUGCACG------UCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 58724 | 0.67 | 0.59203 |
Target: 5'- cGCCC-CCgUGCCGCUc-GCGUcgcGCAGCg -3' miRNA: 3'- -CGGGuGG-ACGGCGGacUGCA---CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 65026 | 0.67 | 0.601999 |
Target: 5'- gGCCCACCUcguacgGCaggggGCCcGGCG-GCGGCg -3' miRNA: 3'- -CGGGUGGA------CGg----CGGaCUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 105563 | 0.67 | 0.601999 |
Target: 5'- cGCCCugCgcgcgcuggcgGCCGCCUucGACGcGCGcGCg -3' miRNA: 3'- -CGGGugGa----------CGGCGGA--CUGCaCGU-CGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 136953 | 0.66 | 0.626 |
Target: 5'- cGCCguCCUgcGCCGCCUGcuggagcuggccgccGCGccggGCGGCg -3' miRNA: 3'- -CGGguGGA--CGGCGGAC---------------UGCa---CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 104879 | 0.66 | 0.621995 |
Target: 5'- cGCCacgCGCCUGCUGCgCgagguggugGACGcgGCGGCg -3' miRNA: 3'- -CGG---GUGGACGGCG-Ga--------CUGCa-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 67991 | 0.66 | 0.621995 |
Target: 5'- gGCCCGCCggcGCCGCggccacgGGCucgGCGGCg -3' miRNA: 3'- -CGGGUGGa--CGGCGga-----CUGca-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 50675 | 0.66 | 0.621995 |
Target: 5'- gGCCgCACCcccgcGCCGCC--GCG-GCAGCg -3' miRNA: 3'- -CGG-GUGGa----CGGCGGacUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 133253 | 0.66 | 0.621995 |
Target: 5'- gGCCUcgcacgGCCUGUCGCUgaaGGCGagccgGCGGCg -3' miRNA: 3'- -CGGG------UGGACGGCGGa--CUGCa----CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 120900 | 0.66 | 0.621995 |
Target: 5'- cGCCCGCUgguggUGCUggGCCUgGGCGU-CAGCa -3' miRNA: 3'- -CGGGUGG-----ACGG--CGGA-CUGCAcGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 61987 | 0.66 | 0.621995 |
Target: 5'- uGCCaCGCCUGCaaggGCacgggUGACGUGCGcGCc -3' miRNA: 3'- -CGG-GUGGACGg---CGg----ACUGCACGU-CGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 60090 | 0.67 | 0.61199 |
Target: 5'- cGCgCCGCCgcgaaCGCCgGGCG-GCAGCg -3' miRNA: 3'- -CG-GGUGGacg--GCGGaCUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 115745 | 0.67 | 0.61199 |
Target: 5'- -aCCACCUugaugGCCGCCUGcuGCuGUccaGCAGCa -3' miRNA: 3'- cgGGUGGA-----CGGCGGAC--UG-CA---CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 90712 | 0.67 | 0.601999 |
Target: 5'- cGCCCGCC--CCGCa-GGCG-GCGGCg -3' miRNA: 3'- -CGGGUGGacGGCGgaCUGCaCGUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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