Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29367 | 5' | -61.1 | NC_006151.1 | + | 15079 | 0.67 | 0.59203 |
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Target: 5'- gGCCC-CCUGgCGCCccGACacGCGGCg -3' miRNA: 3'- -CGGGuGGACgGCGGa-CUGcaCGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 84915 | 0.67 | 0.582089 |
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Target: 5'- cGCCgCGCgCggcGCCGCCUccGGCGUGCucuucGGCa -3' miRNA: 3'- -CGG-GUG-Ga--CGGCGGA--CUGCACG-----UCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 63988 | 0.67 | 0.582089 |
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Target: 5'- aGCgCAUCU-CCGUCUG-CGUGCGGUg -3' miRNA: 3'- -CGgGUGGAcGGCGGACuGCACGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 122350 | 0.67 | 0.582089 |
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Target: 5'- gGCCaagaACCUGCCGC---ACGUGCAcggGCUc -3' miRNA: 3'- -CGGg---UGGACGGCGgacUGCACGU---CGA- -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 85135 | 0.67 | 0.582089 |
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Target: 5'- uGCCugCACCUGgUGCaccGCGUGCGGCa -3' miRNA: 3'- -CGG--GUGGACgGCGgacUGCACGUCGa -5' |
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| 29367 | 5' | -61.1 | NC_006151.1 | + | 65767 | 0.68 | 0.542728 |
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Target: 5'- cGUCC-CCgucGCCGCC-GGCG-GCGGCg -3' miRNA: 3'- -CGGGuGGa--CGGCGGaCUGCaCGUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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