miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 44169 0.66 0.662016
Target:  5'- uGCCCcugggagcACCgcggGUCGCCguccgGGCG-GCGGCg -3'
miRNA:   3'- -CGGG--------UGGa---CGGCGGa----CUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 45841 0.66 0.662016
Target:  5'- cCCCAUCUGCCug--GACGUcGCGGCc -3'
miRNA:   3'- cGGGUGGACGGcggaCUGCA-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 48574 0.69 0.457983
Target:  5'- aCCCugcgGCCUGCCGCCcGGgGUGC-GCc -3'
miRNA:   3'- cGGG----UGGACGGCGGaCUgCACGuCGa -5'
29367 5' -61.1 NC_006151.1 + 49145 0.69 0.494855
Target:  5'- cGCCCGCCcacgGCUGCCUGGag-GCcugGGCg -3'
miRNA:   3'- -CGGGUGGa---CGGCGGACUgcaCG---UCGa -5'
29367 5' -61.1 NC_006151.1 + 49594 0.67 0.562316
Target:  5'- cGCCCcggccagcGCgCUGCCGguCCUGGCgGUGCuGCg -3'
miRNA:   3'- -CGGG--------UG-GACGGC--GGACUG-CACGuCGa -5'
29367 5' -61.1 NC_006151.1 + 50675 0.66 0.621995
Target:  5'- gGCCgCACCcccgcGCCGCC--GCG-GCAGCg -3'
miRNA:   3'- -CGG-GUGGa----CGGCGGacUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 52444 0.69 0.448996
Target:  5'- cGCagCGCC-GCCGCCgUGACG-GCGGCc -3'
miRNA:   3'- -CGg-GUGGaCGGCGG-ACUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 52745 0.67 0.59203
Target:  5'- cGCCCugCUGCgcgcgCGCCUcGCaGcGCAGCg -3'
miRNA:   3'- -CGGGugGACG-----GCGGAcUG-CaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 54293 0.69 0.448996
Target:  5'- cGCuCCACCgagGCCGCC----GUGCGGCa -3'
miRNA:   3'- -CG-GGUGGa--CGGCGGacugCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 55586 0.72 0.341889
Target:  5'- cGCgCUACgUGCCGCCguacgagucgGACGUGgAGCg -3'
miRNA:   3'- -CG-GGUGgACGGCGGa---------CUGCACgUCGa -5'
29367 5' -61.1 NC_006151.1 + 56186 0.69 0.457983
Target:  5'- cGCUgGCCgUGCCGCCggUGGCGcUGCcGCa -3'
miRNA:   3'- -CGGgUGG-ACGGCGG--ACUGC-ACGuCGa -5'
29367 5' -61.1 NC_006151.1 + 56560 0.66 0.669991
Target:  5'- gGCCUGCCgggcgacgcgccGCCGCCcGACGggcUGguGCg -3'
miRNA:   3'- -CGGGUGGa-----------CGGCGGaCUGC---ACguCGa -5'
29367 5' -61.1 NC_006151.1 + 57609 0.7 0.440106
Target:  5'- gGCCUcgGCCgcgGCCGCCUcGACG-GCGcGCg -3'
miRNA:   3'- -CGGG--UGGa--CGGCGGA-CUGCaCGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 57870 0.67 0.572182
Target:  5'- cGCgCGCCccGCCGgCaGACGUcGCAGCg -3'
miRNA:   3'- -CGgGUGGa-CGGCgGaCUGCA-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 58402 0.7 0.405581
Target:  5'- aGCCgGCCaugGCgCGCagcugGGCGUGCGGCa -3'
miRNA:   3'- -CGGgUGGa--CG-GCGga---CUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 58568 0.68 0.523371
Target:  5'- -gCCGCC-GCCGCCcgccGGCGUcGCGGCc -3'
miRNA:   3'- cgGGUGGaCGGCGGa---CUGCA-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 58724 0.67 0.59203
Target:  5'- cGCCC-CCgUGCCGCUc-GCGUcgcGCAGCg -3'
miRNA:   3'- -CGGGuGG-ACGGCGGacUGCA---CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 60090 0.67 0.61199
Target:  5'- cGCgCCGCCgcgaaCGCCgGGCG-GCAGCg -3'
miRNA:   3'- -CG-GGUGGacg--GCGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 61239 0.68 0.552496
Target:  5'- aGCCCAUCggagcGCgCGCCacgagGACGcgGCGGCa -3'
miRNA:   3'- -CGGGUGGa----CG-GCGGa----CUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 61445 0.68 0.523371
Target:  5'- cGCCCGCCcgcguccGCCGCC--AUGUGCGGg- -3'
miRNA:   3'- -CGGGUGGa------CGGCGGacUGCACGUCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.