miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 104250 0.66 0.641019
Target:  5'- cCCgCACCUGCCcgagaacGCC-GGCGcgGCGGCg -3'
miRNA:   3'- cGG-GUGGACGG-------CGGaCUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 73578 0.66 0.64202
Target:  5'- cGCaCCACCgucaggGCgaaGCC-GGgGUGCAGCUg -3'
miRNA:   3'- -CG-GGUGGa-----CGg--CGGaCUgCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 87441 0.66 0.662016
Target:  5'- uGCCCGCC-GCCGCC--GCG-GCcGCc -3'
miRNA:   3'- -CGGGUGGaCGGCGGacUGCaCGuCGa -5'
29367 5' -61.1 NC_006151.1 + 56560 0.66 0.669991
Target:  5'- gGCCUGCCgggcgacgcgccGCCGCCcGACGggcUGguGCg -3'
miRNA:   3'- -CGGGUGGa-----------CGGCGGaCUGC---ACguCGa -5'
29367 5' -61.1 NC_006151.1 + 103806 0.66 0.671982
Target:  5'- gGCCgCGCUgucgGCgGCCgUGGCG-GCGGCc -3'
miRNA:   3'- -CGG-GUGGa---CGgCGG-ACUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 110182 0.66 0.671982
Target:  5'- -gCCGCgUGCCGCCUGauaGCGcGCcGCc -3'
miRNA:   3'- cgGGUGgACGGCGGAC---UGCaCGuCGa -5'
29367 5' -61.1 NC_006151.1 + 122412 0.66 0.671982
Target:  5'- cGCUCGCCgccguggacGCCGCCgaggcccgggaGGCGgagGCGGCg -3'
miRNA:   3'- -CGGGUGGa--------CGGCGGa----------CUGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 37017 0.66 0.671982
Target:  5'- gGCCC-CC-GCCGCCgc-CGcGCGGCg -3'
miRNA:   3'- -CGGGuGGaCGGCGGacuGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 109509 0.66 0.671982
Target:  5'- cUCCGCCgcUGCCGCCgcaGcCGUcucaGCAGCg -3'
miRNA:   3'- cGGGUGG--ACGGCGGa--CuGCA----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 120739 0.66 0.671982
Target:  5'- cGCCCgcgggACCcgGCCgcgucaugGCCUGG-GUGCGGCg -3'
miRNA:   3'- -CGGG-----UGGa-CGG--------CGGACUgCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 45841 0.66 0.662016
Target:  5'- cCCCAUCUGCCug--GACGUcGCGGCc -3'
miRNA:   3'- cGGGUGGACGGcggaCUGCA-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 19342 0.66 0.662016
Target:  5'- gGCCCGCg-GCC-CCgagGcguCGUGCAGCg -3'
miRNA:   3'- -CGGGUGgaCGGcGGa--Cu--GCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 38790 0.66 0.64202
Target:  5'- cGCCCGCUcgggcccaUGCCcgagcaccccgcGCCcGACG-GCGGCUu -3'
miRNA:   3'- -CGGGUGG--------ACGG------------CGGaCUGCaCGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 66068 0.66 0.64202
Target:  5'- cCCCGCggacgGCCGCCUGggcuuccacGCGggccUGCAGCg -3'
miRNA:   3'- cGGGUGga---CGGCGGAC---------UGC----ACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 91481 0.66 0.64202
Target:  5'- -aCCugCUcGCCGCgcacgCUGGCGUGCaccAGCa -3'
miRNA:   3'- cgGGugGA-CGGCG-----GACUGCACG---UCGa -5'
29367 5' -61.1 NC_006151.1 + 85349 0.66 0.652026
Target:  5'- uGCUCGCCgcgcugGCgCGCCUGcGCGUGgucccCGGCg -3'
miRNA:   3'- -CGGGUGGa-----CG-GCGGAC-UGCAC-----GUCGa -5'
29367 5' -61.1 NC_006151.1 + 69691 0.66 0.652026
Target:  5'- cGCCuCGCCgucgauggugGCCGCCgc-CGgggGCAGCa -3'
miRNA:   3'- -CGG-GUGGa---------CGGCGGacuGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 83416 0.66 0.652026
Target:  5'- -aCCACCagguUGCCGCCggggGGCuccccggGCAGCg -3'
miRNA:   3'- cgGGUGG----ACGGCGGa---CUGca-----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 107519 0.66 0.652026
Target:  5'- cGCCCACgCUcCCGCCguUGGCcccgGCGGCc -3'
miRNA:   3'- -CGGGUG-GAcGGCGG--ACUGca--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 44169 0.66 0.662016
Target:  5'- uGCCCcugggagcACCgcggGUCGCCguccgGGCG-GCGGCg -3'
miRNA:   3'- -CGGG--------UGGa---CGGCGGa----CUGCaCGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.