miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 3' -58.7 NC_006151.1 + 140004 1.08 0.0019
Target:  5'- gACGCUCAUGUUCCACGGGGCCGACCUg -3'
miRNA:   3'- -UGCGAGUACAAGGUGCCCCGGCUGGA- -5'
29368 3' -58.7 NC_006151.1 + 136105 0.67 0.729257
Target:  5'- cGCGgUCggGcgCCGC-GGGCUGACCUc -3'
miRNA:   3'- -UGCgAGuaCaaGGUGcCCCGGCUGGA- -5'
29368 3' -58.7 NC_006151.1 + 135469 0.68 0.67987
Target:  5'- uGCGCgccagCGUG-UCCGCGcGGGCCaggcggcgcgcGGCCUc -3'
miRNA:   3'- -UGCGa----GUACaAGGUGC-CCCGG-----------CUGGA- -5'
29368 3' -58.7 NC_006151.1 + 128724 0.66 0.757978
Target:  5'- cACGCUCGucUGggggcugagaCCAUGGGGUCGAgCg -3'
miRNA:   3'- -UGCGAGU--ACaa--------GGUGCCCCGGCUgGa -5'
29368 3' -58.7 NC_006151.1 + 119443 0.68 0.689858
Target:  5'- cACGUUCGUGggCCGCGGcGacguggacGCCGugCg -3'
miRNA:   3'- -UGCGAGUACaaGGUGCC-C--------CGGCugGa -5'
29368 3' -58.7 NC_006151.1 + 119105 0.74 0.361068
Target:  5'- gGCGCguaCGUGagCCGCGcGGCCGGCCUc -3'
miRNA:   3'- -UGCGa--GUACaaGGUGCcCCGGCUGGA- -5'
29368 3' -58.7 NC_006151.1 + 113541 0.66 0.803566
Target:  5'- gGCGCUgAUGcgcgCCGCGGGcCCGcgcGCCg -3'
miRNA:   3'- -UGCGAgUACaa--GGUGCCCcGGC---UGGa -5'
29368 3' -58.7 NC_006151.1 + 104798 0.66 0.767347
Target:  5'- cGCGCUCGUGcgCCgcgaccugGCGGcGGCgcgcgaCGGCCUc -3'
miRNA:   3'- -UGCGAGUACaaGG--------UGCC-CCG------GCUGGA- -5'
29368 3' -58.7 NC_006151.1 + 102864 0.7 0.569233
Target:  5'- aGCGCUuccgCGUGgccaacgCCGCGGuGGCgGGCCUg -3'
miRNA:   3'- -UGCGA----GUACaa-----GGUGCC-CCGgCUGGA- -5'
29368 3' -58.7 NC_006151.1 + 100497 0.67 0.738924
Target:  5'- gGCGCcCGUGUUCCggACGcuguGcGCCGACCa -3'
miRNA:   3'- -UGCGaGUACAAGG--UGCc---C-CGGCUGGa -5'
29368 3' -58.7 NC_006151.1 + 100275 0.72 0.46351
Target:  5'- cCGCuUCGUcUUCCGCGGGcGCaCGGCCUc -3'
miRNA:   3'- uGCG-AGUAcAAGGUGCCC-CG-GCUGGA- -5'
29368 3' -58.7 NC_006151.1 + 100038 0.66 0.785725
Target:  5'- gGCGCUCGcgcacgagcUgCACGGGGUCGugCg -3'
miRNA:   3'- -UGCGAGUaca------AgGUGCCCCGGCugGa -5'
29368 3' -58.7 NC_006151.1 + 99253 0.69 0.589227
Target:  5'- gGCGCUCGUGa-CCGCGGGcuucacgcGCCG-CCa -3'
miRNA:   3'- -UGCGAGUACaaGGUGCCC--------CGGCuGGa -5'
29368 3' -58.7 NC_006151.1 + 98258 0.74 0.353272
Target:  5'- gGCGCUCGUGcgCgCGCucgaGGaGGCCGACCa -3'
miRNA:   3'- -UGCGAGUACaaG-GUG----CC-CCGGCUGGa -5'
29368 3' -58.7 NC_006151.1 + 98188 0.67 0.719508
Target:  5'- cACGCUCAUcGUcgcgCCgcGCGGGGUCGAgUg -3'
miRNA:   3'- -UGCGAGUA-CAa---GG--UGCCCCGGCUgGa -5'
29368 3' -58.7 NC_006151.1 + 89083 0.67 0.729257
Target:  5'- cGCGCgUCcgguuguUGUUCCGCGGGGgCuuCCUg -3'
miRNA:   3'- -UGCG-AGu------ACAAGGUGCCCCgGcuGGA- -5'
29368 3' -58.7 NC_006151.1 + 74933 0.67 0.719508
Target:  5'- cGCGCgCGUcccuaaagUCCACGGGGCacagGGCCa -3'
miRNA:   3'- -UGCGaGUAca------AGGUGCCCCGg---CUGGa -5'
29368 3' -58.7 NC_006151.1 + 69819 0.69 0.598266
Target:  5'- gGCGCUCGccgUCCACGuuguagcgcgugcGGGCCGGCa- -3'
miRNA:   3'- -UGCGAGUacaAGGUGC-------------CCCGGCUGga -5'
29368 3' -58.7 NC_006151.1 + 69451 0.66 0.803566
Target:  5'- cGCGUccUCGcGcgCCGCGGGcGCCGGCa- -3'
miRNA:   3'- -UGCG--AGUaCaaGGUGCCC-CGGCUGga -5'
29368 3' -58.7 NC_006151.1 + 66112 0.66 0.803566
Target:  5'- cGCGCUUuuUGUUCCACagacuccacccgGGcGGCCaGCCg -3'
miRNA:   3'- -UGCGAGu-ACAAGGUG------------CC-CCGGcUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.