Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29368 | 3' | -58.7 | NC_006151.1 | + | 74933 | 0.67 | 0.719508 |
Target: 5'- cGCGCgCGUcccuaaagUCCACGGGGCacagGGCCa -3' miRNA: 3'- -UGCGaGUAca------AGGUGCCCCGg---CUGGa -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 89083 | 0.67 | 0.729257 |
Target: 5'- cGCGCgUCcgguuguUGUUCCGCGGGGgCuuCCUg -3' miRNA: 3'- -UGCG-AGu------ACAAGGUGCCCCgGcuGGA- -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 98188 | 0.67 | 0.719508 |
Target: 5'- cACGCUCAUcGUcgcgCCgcGCGGGGUCGAgUg -3' miRNA: 3'- -UGCGAGUA-CAa---GG--UGCCCCGGCUgGa -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 98258 | 0.74 | 0.353272 |
Target: 5'- gGCGCUCGUGcgCgCGCucgaGGaGGCCGACCa -3' miRNA: 3'- -UGCGAGUACaaG-GUG----CC-CCGGCUGGa -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 99253 | 0.69 | 0.589227 |
Target: 5'- gGCGCUCGUGa-CCGCGGGcuucacgcGCCG-CCa -3' miRNA: 3'- -UGCGAGUACaaGGUGCCC--------CGGCuGGa -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 100038 | 0.66 | 0.785725 |
Target: 5'- gGCGCUCGcgcacgagcUgCACGGGGUCGugCg -3' miRNA: 3'- -UGCGAGUaca------AgGUGCCCCGGCugGa -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 100275 | 0.72 | 0.46351 |
Target: 5'- cCGCuUCGUcUUCCGCGGGcGCaCGGCCUc -3' miRNA: 3'- uGCG-AGUAcAAGGUGCCC-CG-GCUGGA- -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 100497 | 0.67 | 0.738924 |
Target: 5'- gGCGCcCGUGUUCCggACGcuguGcGCCGACCa -3' miRNA: 3'- -UGCGaGUACAAGG--UGCc---C-CGGCUGGa -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 102864 | 0.7 | 0.569233 |
Target: 5'- aGCGCUuccgCGUGgccaacgCCGCGGuGGCgGGCCUg -3' miRNA: 3'- -UGCGA----GUACaa-----GGUGCC-CCGgCUGGA- -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 104798 | 0.66 | 0.767347 |
Target: 5'- cGCGCUCGUGcgCCgcgaccugGCGGcGGCgcgcgaCGGCCUc -3' miRNA: 3'- -UGCGAGUACaaGG--------UGCC-CCG------GCUGGA- -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 113541 | 0.66 | 0.803566 |
Target: 5'- gGCGCUgAUGcgcgCCGCGGGcCCGcgcGCCg -3' miRNA: 3'- -UGCGAgUACaa--GGUGCCCcGGC---UGGa -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 119105 | 0.74 | 0.361068 |
Target: 5'- gGCGCguaCGUGagCCGCGcGGCCGGCCUc -3' miRNA: 3'- -UGCGa--GUACaaGGUGCcCCGGCUGGA- -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 119443 | 0.68 | 0.689858 |
Target: 5'- cACGUUCGUGggCCGCGGcGacguggacGCCGugCg -3' miRNA: 3'- -UGCGAGUACaaGGUGCC-C--------CGGCugGa -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 128724 | 0.66 | 0.757978 |
Target: 5'- cACGCUCGucUGggggcugagaCCAUGGGGUCGAgCg -3' miRNA: 3'- -UGCGAGU--ACaa--------GGUGCCCCGGCUgGa -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 135469 | 0.68 | 0.67987 |
Target: 5'- uGCGCgccagCGUG-UCCGCGcGGGCCaggcggcgcgcGGCCUc -3' miRNA: 3'- -UGCGa----GUACaAGGUGC-CCCGG-----------CUGGA- -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 136105 | 0.67 | 0.729257 |
Target: 5'- cGCGgUCggGcgCCGC-GGGCUGACCUc -3' miRNA: 3'- -UGCgAGuaCaaGGUGcCCCGGCUGGA- -5' |
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29368 | 3' | -58.7 | NC_006151.1 | + | 140004 | 1.08 | 0.0019 |
Target: 5'- gACGCUCAUGUUCCACGGGGCCGACCUg -3' miRNA: 3'- -UGCGAGUACAAGGUGCCCCGGCUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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