miRNA display CGI


Results 41 - 60 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 104526 0.66 0.516405
Target:  5'- cCGCCgCGGCuuccccgaguacgAGGCCgaGCuggccgcccugGGCGcGCGGCg -3'
miRNA:   3'- -GCGG-GCUG-------------UCCGGgaCG-----------CCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 19377 0.66 0.498942
Target:  5'- gGCCCGugucguuggGCGuGGCCCgccgGaCGGUcagguGCGGCg -3'
miRNA:   3'- gCGGGC---------UGU-CCGGGa---C-GCCGu----CGCCG- -5'
29369 3' -65 NC_006151.1 + 10192 0.66 0.498942
Target:  5'- uCGCCgGuCGcGGCgCggGCGGCGGCuGCa -3'
miRNA:   3'- -GCGGgCuGU-CCGgGa-CGCCGUCGcCG- -5'
29369 3' -65 NC_006151.1 + 36102 0.66 0.489858
Target:  5'- cCGCCgaGGCcgAGGCcgccguCCUcGCGGCcGCGGCc -3'
miRNA:   3'- -GCGGg-CUG--UCCG------GGA-CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 49243 0.66 0.489858
Target:  5'- cCGCUCGGCugggcgcGGCUCgUGCGcGCcgucguccAGCGGCu -3'
miRNA:   3'- -GCGGGCUGu------CCGGG-ACGC-CG--------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 138783 0.66 0.489858
Target:  5'- uCGCCUGGC-GGCCgUcgcGUGGCuccucuacGCGGCc -3'
miRNA:   3'- -GCGGGCUGuCCGGgA---CGCCGu-------CGCCG- -5'
29369 3' -65 NC_006151.1 + 38538 0.66 0.496209
Target:  5'- gGCCCGGaccCAGcGCCCgaGCGGCGcaagaagaagcgccGCGcGCc -3'
miRNA:   3'- gCGGGCU---GUC-CGGGa-CGCCGU--------------CGC-CG- -5'
29369 3' -65 NC_006151.1 + 103231 0.66 0.496209
Target:  5'- gCGCgCGAUggAGGaCCugCUGCGGCacauccgcgccaugGGCGGCc -3'
miRNA:   3'- -GCGgGCUG--UCC-GG--GACGCCG--------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 54491 0.66 0.496209
Target:  5'- aCGCUgcaGAU-GGCCCUccuggacuuugugcGCGGCAucGCGGCc -3'
miRNA:   3'- -GCGGg--CUGuCCGGGA--------------CGCCGU--CGCCG- -5'
29369 3' -65 NC_006151.1 + 99325 0.66 0.497119
Target:  5'- cCGCCUGACGGacgcgcagcGCgCCgucggcugcacgGCGGUcgucGGCGGCg -3'
miRNA:   3'- -GCGGGCUGUC---------CG-GGa-----------CGCCG----UCGCCG- -5'
29369 3' -65 NC_006151.1 + 70066 0.66 0.498031
Target:  5'- aCGCCCGAgccguggUAGcGCgUCUGCGcGUgGGCGGCg -3'
miRNA:   3'- -GCGGGCU-------GUC-CG-GGACGC-CG-UCGCCG- -5'
29369 3' -65 NC_006151.1 + 49593 0.66 0.498942
Target:  5'- gCGcCCCGGcCAGcGCgCUGcCGGUccuGGCGGUg -3'
miRNA:   3'- -GC-GGGCU-GUC-CGgGAC-GCCG---UCGCCG- -5'
29369 3' -65 NC_006151.1 + 63155 0.66 0.498942
Target:  5'- cCGCgCGACacgcgguacgGGGCCUUGgGGCGcacGgGGCc -3'
miRNA:   3'- -GCGgGCUG----------UCCGGGACgCCGU---CgCCG- -5'
29369 3' -65 NC_006151.1 + 73017 0.66 0.498942
Target:  5'- uGCCgCuGCgAGGCCCaggGauuGGCGGUGGCg -3'
miRNA:   3'- gCGG-GcUG-UCCGGGa--Cg--CCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 90245 0.66 0.498942
Target:  5'- gGCUgGcCAGcGCCCagcccGCGGCgaagacGGCGGCg -3'
miRNA:   3'- gCGGgCuGUC-CGGGa----CGCCG------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 138097 0.67 0.454332
Target:  5'- uCGCCCGGCGcacGCCgCUgGCGGaCAugcugcGCGGCc -3'
miRNA:   3'- -GCGGGCUGUc--CGG-GA-CGCC-GU------CGCCG- -5'
29369 3' -65 NC_006151.1 + 10492 0.67 0.454332
Target:  5'- cCGCCCGGCGcGcGCCCgccGCcGCAGgcgcgucccCGGCg -3'
miRNA:   3'- -GCGGGCUGU-C-CGGGa--CGcCGUC---------GCCG- -5'
29369 3' -65 NC_006151.1 + 44879 0.67 0.454332
Target:  5'- uCGCCCGACcucGGCggUgUGCGGUGGUGuGUg -3'
miRNA:   3'- -GCGGGCUGu--CCG--GgACGCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 64521 0.67 0.454332
Target:  5'- cCGCCaa--AGGCCgCcGCGGCcgcgucgggGGCGGCg -3'
miRNA:   3'- -GCGGgcugUCCGG-GaCGCCG---------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 6135 0.67 0.454332
Target:  5'- gGCuCCGGCcgcGGCCgCgaggacgGCGGCcucggccucGGCGGCg -3'
miRNA:   3'- gCG-GGCUGu--CCGG-Ga------CGCCG---------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.