miRNA display CGI


Results 61 - 80 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 133253 0.67 0.440516
Target:  5'- gGCCUcGCAcGGCCUgucgcugaaggcgaGcCGGCGGCGGCc -3'
miRNA:   3'- gCGGGcUGU-CCGGGa-------------C-GCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 82406 0.67 0.4371
Target:  5'- gCGCCCGAgGgcGGCCCcGagaGGC-GCGGg -3'
miRNA:   3'- -GCGGGCUgU--CCGGGaCg--CCGuCGCCg -5'
29369 3' -65 NC_006151.1 + 76806 0.67 0.4371
Target:  5'- gCGcCCCGGCgAGGgCggGCGcGUAGUGGCg -3'
miRNA:   3'- -GC-GGGCUG-UCCgGgaCGC-CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 17392 0.67 0.4371
Target:  5'- cCGCaCGACGGGgCgC-GUGGCGcGCGGCa -3'
miRNA:   3'- -GCGgGCUGUCCgG-GaCGCCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 90747 0.67 0.4371
Target:  5'- nCGCCCucgggggcGGCGGGCacgGUGGCGGgguCGGCg -3'
miRNA:   3'- -GCGGG--------CUGUCCGggaCGCCGUC---GCCG- -5'
29369 3' -65 NC_006151.1 + 89937 0.67 0.4371
Target:  5'- gCGCCC--CAGGUCC-GCGGgC-GCGGCc -3'
miRNA:   3'- -GCGGGcuGUCCGGGaCGCC-GuCGCCG- -5'
29369 3' -65 NC_006151.1 + 104885 0.67 0.445669
Target:  5'- gCGCCUGcugcGCgAGGUgguggacGCGGCGGCGGCg -3'
miRNA:   3'- -GCGGGC----UG-UCCGgga----CGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 113419 0.67 0.445669
Target:  5'- gCGCaCUGGCuGGCgCUGCgccgcuuccGGC-GCGGCg -3'
miRNA:   3'- -GCG-GGCUGuCCGgGACG---------CCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 71960 0.67 0.445669
Target:  5'- cCGCCuCGGCGuugucGCggUGCGGCGGgGGCa -3'
miRNA:   3'- -GCGG-GCUGUc----CGggACGCCGUCgCCG- -5'
29369 3' -65 NC_006151.1 + 64521 0.67 0.454332
Target:  5'- cCGCCaa--AGGCCgCcGCGGCcgcgucgggGGCGGCg -3'
miRNA:   3'- -GCGGgcugUCCGG-GaCGCCG---------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 44879 0.67 0.454332
Target:  5'- uCGCCCGACcucGGCggUgUGCGGUGGUGuGUg -3'
miRNA:   3'- -GCGGGCUGu--CCG--GgACGCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 10492 0.67 0.454332
Target:  5'- cCGCCCGGCGcGcGCCCgccGCcGCAGgcgcgucccCGGCg -3'
miRNA:   3'- -GCGGGCUGU-C-CGGGa--CGcCGUC---------GCCG- -5'
29369 3' -65 NC_006151.1 + 138097 0.67 0.454332
Target:  5'- uCGCCCGGCGcacGCCgCUgGCGGaCAugcugcGCGGCc -3'
miRNA:   3'- -GCGGGCUGUc--CGG-GA-CGCC-GU------CGCCG- -5'
29369 3' -65 NC_006151.1 + 6135 0.67 0.454332
Target:  5'- gGCuCCGGCcgcGGCCgCgaggacgGCGGCcucggccucGGCGGCg -3'
miRNA:   3'- gCG-GGCUGu--CCGG-Ga------CGCCG---------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 90895 0.67 0.454332
Target:  5'- gGCCCG-CA-GCCgCUGCaGCAGCGucaGCa -3'
miRNA:   3'- gCGGGCuGUcCGG-GACGcCGUCGC---CG- -5'
29369 3' -65 NC_006151.1 + 87341 0.67 0.454332
Target:  5'- gGCCUGcCGGGCCUccagGGCcuGGCGGCc -3'
miRNA:   3'- gCGGGCuGUCCGGGacg-CCG--UCGCCG- -5'
29369 3' -65 NC_006151.1 + 133609 0.67 0.454332
Target:  5'- aGgCCGAgGGGCgUCUGgGggucGCGGCGGCc -3'
miRNA:   3'- gCgGGCUgUCCG-GGACgC----CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 127987 0.67 0.453461
Target:  5'- uCGUgCGGC-GGCUCcGCgucgcggucgcggGGCGGCGGCg -3'
miRNA:   3'- -GCGgGCUGuCCGGGaCG-------------CCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 4278 0.67 0.451723
Target:  5'- aCGCCgCGGCAGGCCaggacgcaggcguccGCcagcucgcggGGCAcGCGGCc -3'
miRNA:   3'- -GCGG-GCUGUCCGGga-------------CG----------CCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 85640 0.67 0.4371
Target:  5'- gCGCCagcgggGACGcGCCCgccuCGcGCAGCGGCg -3'
miRNA:   3'- -GCGGg-----CUGUcCGGGac--GC-CGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.