miRNA display CGI


Results 101 - 120 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 64521 0.67 0.454332
Target:  5'- cCGCCaa--AGGCCgCcGCGGCcgcgucgggGGCGGCg -3'
miRNA:   3'- -GCGGgcugUCCGG-GaCGCCG---------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 75110 0.67 0.454332
Target:  5'- uGCCgGGCGccagcagcuGGUCg-GCGGcCGGCGGCg -3'
miRNA:   3'- gCGGgCUGU---------CCGGgaCGCC-GUCGCCG- -5'
29369 3' -65 NC_006151.1 + 91104 0.67 0.445669
Target:  5'- uCGuCCCGGCcgcGGcGCCCUucgccaCGGCGGCGaGCu -3'
miRNA:   3'- -GC-GGGCUG---UC-CGGGAc-----GCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 39335 0.67 0.445669
Target:  5'- uGCUCG-C-GGCUCggcGCGGC-GCGGCg -3'
miRNA:   3'- gCGGGCuGuCCGGGa--CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 107885 0.67 0.445669
Target:  5'- gGCCCccCAGGCCCaGCcGCccgccGCGGCc -3'
miRNA:   3'- gCGGGcuGUCCGGGaCGcCGu----CGCCG- -5'
29369 3' -65 NC_006151.1 + 84483 0.67 0.436248
Target:  5'- uCGCCUucgAGGCCgCUGCgaucccgGGCAGCGcGCg -3'
miRNA:   3'- -GCGGGcugUCCGG-GACG-------CCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 85074 0.67 0.4371
Target:  5'- gGCCUG-CGGGCgCCUGUacgugGGCAacCGGCa -3'
miRNA:   3'- gCGGGCuGUCCG-GGACG-----CCGUc-GCCG- -5'
29369 3' -65 NC_006151.1 + 137080 0.67 0.4371
Target:  5'- gCGCaCCGGCgccAGGCCUUcGCGGU-GCuGGCc -3'
miRNA:   3'- -GCG-GGCUG---UCCGGGA-CGCCGuCG-CCG- -5'
29369 3' -65 NC_006151.1 + 21393 0.67 0.4371
Target:  5'- aCGgCCGGCGGGgCgaagggGCGGU-GCGGCg -3'
miRNA:   3'- -GCgGGCUGUCCgGga----CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 40577 0.67 0.4371
Target:  5'- gGCCgCGGCggaGGGCUCgGCGGCGGaGGa -3'
miRNA:   3'- gCGG-GCUG---UCCGGGaCGCCGUCgCCg -5'
29369 3' -65 NC_006151.1 + 85640 0.67 0.4371
Target:  5'- gCGCCagcgggGACGcGCCCgccuCGcGCAGCGGCg -3'
miRNA:   3'- -GCGGg-----CUGUcCGGGac--GC-CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 89937 0.67 0.4371
Target:  5'- gCGCCC--CAGGUCC-GCGGgC-GCGGCc -3'
miRNA:   3'- -GCGGGcuGUCCGGGaCGCC-GuCGCCG- -5'
29369 3' -65 NC_006151.1 + 90747 0.67 0.4371
Target:  5'- nCGCCCucgggggcGGCGGGCacgGUGGCGGgguCGGCg -3'
miRNA:   3'- -GCGGG--------CUGUCCGggaCGCCGUC---GCCG- -5'
29369 3' -65 NC_006151.1 + 17392 0.67 0.4371
Target:  5'- cCGCaCGACGGGgCgC-GUGGCGcGCGGCa -3'
miRNA:   3'- -GCGgGCUGUCCgG-GaCGCCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 76806 0.67 0.4371
Target:  5'- gCGcCCCGGCgAGGgCggGCGcGUAGUGGCg -3'
miRNA:   3'- -GC-GGGCUG-UCCgGgaCGC-CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 82406 0.67 0.4371
Target:  5'- gCGCCCGAgGgcGGCCCcGagaGGC-GCGGg -3'
miRNA:   3'- -GCGGGCUgU--CCGGGaCg--CCGuCGCCg -5'
29369 3' -65 NC_006151.1 + 133253 0.67 0.440516
Target:  5'- gGCCUcGCAcGGCCUgucgcugaaggcgaGcCGGCGGCGGCc -3'
miRNA:   3'- gCGGGcUGU-CCGGGa-------------C-GCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 45577 0.67 0.445669
Target:  5'- uCGuCCCGGgAcGGCCCgagGgGGCGGgGGg -3'
miRNA:   3'- -GC-GGGCUgU-CCGGGa--CgCCGUCgCCg -5'
29369 3' -65 NC_006151.1 + 78679 0.67 0.445669
Target:  5'- uGCUgGACGGGCUCUacGcCGGCcGgGGCc -3'
miRNA:   3'- gCGGgCUGUCCGGGA--C-GCCGuCgCCG- -5'
29369 3' -65 NC_006151.1 + 21049 0.68 0.403797
Target:  5'- aCGCCCccGACgcgcgGGGUCaggGCGGCcagggucagGGCGGCg -3'
miRNA:   3'- -GCGGG--CUG-----UCCGGga-CGCCG---------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.