miRNA display CGI


Results 121 - 140 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 59293 0.68 0.387758
Target:  5'- aGCgCGGCGuGGCgCCcGCGGCucAGCGGg -3'
miRNA:   3'- gCGgGCUGU-CCG-GGaCGCCG--UCGCCg -5'
29369 3' -65 NC_006151.1 + 26968 0.68 0.387758
Target:  5'- aGCUCGcGCAGcGCgCUGC-GCAGCGGg -3'
miRNA:   3'- gCGGGC-UGUC-CGgGACGcCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 54373 0.68 0.386968
Target:  5'- gGCCCGGgacuggaUGGcGCaCCUGCGcGCGcGCGGCc -3'
miRNA:   3'- gCGGGCU-------GUC-CG-GGACGC-CGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 137657 0.68 0.379898
Target:  5'- cCGuCCCGGCGGacgagcgcccGCCgUGCGGCuGCcGCg -3'
miRNA:   3'- -GC-GGGCUGUC----------CGGgACGCCGuCGcCG- -5'
29369 3' -65 NC_006151.1 + 117255 0.68 0.379898
Target:  5'- gGCCCGaggcGCGGGCCgCgcGCGGCcgccgccgacAGCGcGCg -3'
miRNA:   3'- gCGGGC----UGUCCGG-Ga-CGCCG----------UCGC-CG- -5'
29369 3' -65 NC_006151.1 + 85508 0.68 0.379898
Target:  5'- gCGCCaCGgugaacaccaucACGGGCCugCUGCuGCuGCGGCg -3'
miRNA:   3'- -GCGG-GC------------UGUCCGG--GACGcCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 2102 0.68 0.379898
Target:  5'- gGCCCGAgCGGGCC--GCGGgGcCGGCc -3'
miRNA:   3'- gCGGGCU-GUCCGGgaCGCCgUcGCCG- -5'
29369 3' -65 NC_006151.1 + 127799 0.68 0.379898
Target:  5'- cCGCCgCGcGCGGGggcgcgagguCCUUGCGGUucacguacguGGCGGCg -3'
miRNA:   3'- -GCGG-GC-UGUCC----------GGGACGCCG----------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 86448 0.68 0.387758
Target:  5'- gCGCCCGGCgAGGCCCccgacgagacgcucuUugcgcacGUGGCgcucugcgugaucgGGCGGCg -3'
miRNA:   3'- -GCGGGCUG-UCCGGG---------------A-------CGCCG--------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 87548 0.68 0.387758
Target:  5'- cCGCCCGucCAGGCCUcggucuCGGCcccGGCGGa -3'
miRNA:   3'- -GCGGGCu-GUCCGGGac----GCCG---UCGCCg -5'
29369 3' -65 NC_006151.1 + 112583 0.68 0.387758
Target:  5'- uCGCCCG-CGGGCUUcGUGGaggccgccGCGGCg -3'
miRNA:   3'- -GCGGGCuGUCCGGGaCGCCgu------CGCCG- -5'
29369 3' -65 NC_006151.1 + 21049 0.68 0.403797
Target:  5'- aCGCCCccGACgcgcgGGGUCaggGCGGCcagggucagGGCGGCg -3'
miRNA:   3'- -GCGGG--CUG-----UCCGGga-CGCCG---------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 122376 0.68 0.403797
Target:  5'- gGCUCGACgAGGCgcgCCgcggGCGcGCgcuGGCGGCg -3'
miRNA:   3'- gCGGGCUG-UCCG---GGa---CGC-CG---UCGCCG- -5'
29369 3' -65 NC_006151.1 + 75416 0.68 0.402985
Target:  5'- gGUCCGGgAGGCCCgGCgugGGCGcgaagcugccggcGUGGCg -3'
miRNA:   3'- gCGGGCUgUCCGGGaCG---CCGU-------------CGCCG- -5'
29369 3' -65 NC_006151.1 + 18670 0.68 0.401365
Target:  5'- uCGUCCGGCcguacggguuccacGGGCgCgcggGCGGCGcCGGCg -3'
miRNA:   3'- -GCGGGCUG--------------UCCGgGa---CGCCGUcGCCG- -5'
29369 3' -65 NC_006151.1 + 102378 0.68 0.395725
Target:  5'- gCGCCCGu--GGCCaaGCuGGCGcuggucGCGGCg -3'
miRNA:   3'- -GCGGGCuguCCGGgaCG-CCGU------CGCCG- -5'
29369 3' -65 NC_006151.1 + 97193 0.68 0.395725
Target:  5'- gCGCUCGACGGuGCCgagGCGcacguaGGCGGCg -3'
miRNA:   3'- -GCGGGCUGUC-CGGga-CGCcg----UCGCCG- -5'
29369 3' -65 NC_006151.1 + 40435 0.68 0.393324
Target:  5'- gGCCCGGCGgcgcuugccuccccGGCgCCUGCcuccccGGCccGGUGGCc -3'
miRNA:   3'- gCGGGCUGU--------------CCG-GGACG------CCG--UCGCCG- -5'
29369 3' -65 NC_006151.1 + 121056 0.68 0.387758
Target:  5'- uGCCCGcGCguGGGCUUcacgUGCucgcagacgGGCGGCGGCg -3'
miRNA:   3'- gCGGGC-UG--UCCGGG----ACG---------CCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 72826 0.68 0.374459
Target:  5'- gCGCCC-ACGGGCCgCUugaacugguacucccGUugcucgucggcgaGGCGGCGGCg -3'
miRNA:   3'- -GCGGGcUGUCCGG-GA---------------CG-------------CCGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.