miRNA display CGI


Results 81 - 100 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 105544 0.72 0.209133
Target:  5'- gGCCCGagcuGCGGcacgacGCCCUGCGcGCgcuGGCGGCc -3'
miRNA:   3'- gCGGGC----UGUC------CGGGACGC-CG---UCGCCG- -5'
29369 3' -65 NC_006151.1 + 57486 0.72 0.213573
Target:  5'- gGCCUcGCAGGCgacgcgcacgcgcUCggccGCGGCGGCGGCg -3'
miRNA:   3'- gCGGGcUGUCCG-------------GGa---CGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 136823 0.72 0.214071
Target:  5'- aCGCgCCGcGCGGGCUCUGCGaC-GCGGCc -3'
miRNA:   3'- -GCG-GGC-UGUCCGGGACGCcGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 141605 0.72 0.216074
Target:  5'- cCGCCCGGCgaggcugccgggaucGGGCgggucgCUGCcGCGGCGGCg -3'
miRNA:   3'- -GCGGGCUG---------------UCCGg-----GACGcCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 133655 0.72 0.219109
Target:  5'- gGUgCGAgAGGCgCUGcCGGCgcGGCGGCg -3'
miRNA:   3'- gCGgGCUgUCCGgGAC-GCCG--UCGCCG- -5'
29369 3' -65 NC_006151.1 + 121390 0.72 0.219109
Target:  5'- cCGCCuuCGACuuuGGGgCCUGCGGCgcgGGCGGg -3'
miRNA:   3'- -GCGG--GCUG---UCCgGGACGCCG---UCGCCg -5'
29369 3' -65 NC_006151.1 + 81528 0.72 0.219109
Target:  5'- aGCUCGGC-GGCC--GCGGCGGCGcGCu -3'
miRNA:   3'- gCGGGCUGuCCGGgaCGCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 36915 0.72 0.219109
Target:  5'- gCGCCgGAgAGGCgCCcuccgccGCGGCcGCGGCu -3'
miRNA:   3'- -GCGGgCUgUCCG-GGa------CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 30928 0.72 0.219109
Target:  5'- gGCCCGcGCGGaucGCCCgcGCGGUAucGCGGCg -3'
miRNA:   3'- gCGGGC-UGUC---CGGGa-CGCCGU--CGCCG- -5'
29369 3' -65 NC_006151.1 + 2411 0.72 0.219109
Target:  5'- aGCUCGGCgAGGCCCcgGCGGCcGCaGGa -3'
miRNA:   3'- gCGGGCUG-UCCGGGa-CGCCGuCG-CCg -5'
29369 3' -65 NC_006151.1 + 94671 0.72 0.224248
Target:  5'- uGCCCGGCGGGCagcuccCCgaaGGCcGCGGCc -3'
miRNA:   3'- gCGGGCUGUCCG------GGacgCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 130863 0.72 0.224248
Target:  5'- gGCgCgGGCGGGaCCgcaguggGCGGCGGCGGUg -3'
miRNA:   3'- gCG-GgCUGUCCgGGa------CGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 72091 0.72 0.224248
Target:  5'- aGCUCG-CGGGCCUgggcgaGCGGCAGCGuCa -3'
miRNA:   3'- gCGGGCuGUCCGGGa-----CGCCGUCGCcG- -5'
29369 3' -65 NC_006151.1 + 98352 0.72 0.229489
Target:  5'- aCGCCCGcgggcgugcGCGGGCUCUG-GGCGcGCGcGCu -3'
miRNA:   3'- -GCGGGC---------UGUCCGGGACgCCGU-CGC-CG- -5'
29369 3' -65 NC_006151.1 + 104585 0.72 0.229489
Target:  5'- aCGUgCuGCAGGCCg-GCGGCAgccGCGGCg -3'
miRNA:   3'- -GCGgGcUGUCCGGgaCGCCGU---CGCCG- -5'
29369 3' -65 NC_006151.1 + 29070 0.72 0.229489
Target:  5'- gGCgCCG-CGGGCCCcgaGaCGGCcGCGGCg -3'
miRNA:   3'- gCG-GGCuGUCCGGGa--C-GCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 33946 0.72 0.229489
Target:  5'- gCGCCCcGgGGGCUCgggGCGGgAcGCGGCg -3'
miRNA:   3'- -GCGGGcUgUCCGGGa--CGCCgU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 72265 0.72 0.229489
Target:  5'- aCGCCgagCGGCGuGGCCagcaUGCGGU-GCGGCg -3'
miRNA:   3'- -GCGG---GCUGU-CCGGg---ACGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 76251 0.72 0.229489
Target:  5'- aGCCCGA-GGGCCUcGaCGGCgaucgagaaGGCGGCg -3'
miRNA:   3'- gCGGGCUgUCCGGGaC-GCCG---------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 17119 0.72 0.229489
Target:  5'- gGCuCCGGCGgcGGUgCUGCGGgaGGCGGCc -3'
miRNA:   3'- gCG-GGCUGU--CCGgGACGCCg-UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.