miRNA display CGI


Results 101 - 120 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 89457 0.72 0.229489
Target:  5'- aCGCCUGcACcagcaGGGCCCgcgucacGUGcGCGGCGGCg -3'
miRNA:   3'- -GCGGGC-UG-----UCCGGGa------CGC-CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 17119 0.72 0.229489
Target:  5'- gGCuCCGGCGgcGGUgCUGCGGgaGGCGGCc -3'
miRNA:   3'- gCG-GGCUGU--CCGgGACGCCg-UCGCCG- -5'
29369 3' -65 NC_006151.1 + 127907 0.72 0.229489
Target:  5'- aGCUCGG-GGGCCCcucggggaGCGGgGGCGGCg -3'
miRNA:   3'- gCGGGCUgUCCGGGa-------CGCCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 63472 0.72 0.229489
Target:  5'- uGCUCG-CAGGg---GCGGCGGCGGCg -3'
miRNA:   3'- gCGGGCuGUCCgggaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 76251 0.72 0.229489
Target:  5'- aGCCCGA-GGGCCUcGaCGGCgaucgagaaGGCGGCg -3'
miRNA:   3'- gCGGGCUgUCCGGGaC-GCCG---------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 137748 0.71 0.234833
Target:  5'- gGCgCCGACAcGGUCC-GCGGCcuGGCGcGCg -3'
miRNA:   3'- gCG-GGCUGU-CCGGGaCGCCG--UCGC-CG- -5'
29369 3' -65 NC_006151.1 + 31230 0.71 0.234833
Target:  5'- cCGgCCGGCcGGCCCgGCGaGCgAGCGGg -3'
miRNA:   3'- -GCgGGCUGuCCGGGaCGC-CG-UCGCCg -5'
29369 3' -65 NC_006151.1 + 64876 0.71 0.234833
Target:  5'- uGCCCGGCGGGagcagggCC-GCGaagagcacGCAGCGGCg -3'
miRNA:   3'- gCGGGCUGUCCg------GGaCGC--------CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 123114 0.71 0.236999
Target:  5'- gCGCUCGGCGGcgaGCCUggcgcagugcgugcGCGaGCAGCGGCg -3'
miRNA:   3'- -GCGGGCUGUC---CGGGa-------------CGC-CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 133460 0.71 0.236999
Target:  5'- gGcCCCGGuCgAGGCCCgcgagGCGGCcgcgggcgucaccuuGGCGGCg -3'
miRNA:   3'- gC-GGGCU-G-UCCGGGa----CGCCG---------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 53940 0.71 0.239731
Target:  5'- cCGCCgCGGCgAGggacuugaaccacGCCa-GCGGCGGCGGCg -3'
miRNA:   3'- -GCGG-GCUG-UC-------------CGGgaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 135594 0.71 0.239731
Target:  5'- uCGUCCGGCGGcucauaaGCCCUcccaCGGCcGCGGCg -3'
miRNA:   3'- -GCGGGCUGUC-------CGGGAc---GCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 72627 0.71 0.240281
Target:  5'- gGUCCGGC-GGUCCcGCGGUcccGCGGCu -3'
miRNA:   3'- gCGGGCUGuCCGGGaCGCCGu--CGCCG- -5'
29369 3' -65 NC_006151.1 + 139272 0.71 0.240281
Target:  5'- gCGCuCCGACGGcggacgcgccGCCCU-CGGCGucuGCGGCg -3'
miRNA:   3'- -GCG-GGCUGUC----------CGGGAcGCCGU---CGCCG- -5'
29369 3' -65 NC_006151.1 + 3548 0.71 0.240281
Target:  5'- gGUCCGgaGCGGGCCCgaguccgaGGgAGCGGCg -3'
miRNA:   3'- gCGGGC--UGUCCGGGacg-----CCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 90665 0.71 0.240281
Target:  5'- gCGCggggCGGCGGGCCgCUugucccccGCGGCGGgGGCg -3'
miRNA:   3'- -GCGg---GCUGUCCGG-GA--------CGCCGUCgCCG- -5'
29369 3' -65 NC_006151.1 + 20717 0.71 0.245834
Target:  5'- gCGUCCGGCGGGgCCggGCGcgagacgaacaGCAGcCGGCg -3'
miRNA:   3'- -GCGGGCUGUCCgGGa-CGC-----------CGUC-GCCG- -5'
29369 3' -65 NC_006151.1 + 79307 0.71 0.245834
Target:  5'- gCGCCCcggGACGGGCCUcccCGGCGGgaCGGCc -3'
miRNA:   3'- -GCGGG---CUGUCCGGGac-GCCGUC--GCCG- -5'
29369 3' -65 NC_006151.1 + 38362 0.71 0.249784
Target:  5'- aGCCCGGCcucgucgucccagcGccGGCgCCgGCGGCGGCGGg -3'
miRNA:   3'- gCGGGCUG--------------U--CCG-GGaCGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 21327 0.71 0.250922
Target:  5'- aCGCCCGGCgcggcggGGGUCC-GCGGCuggaaCGGCu -3'
miRNA:   3'- -GCGGGCUG-------UCCGGGaCGCCGuc---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.