miRNA display CGI


Results 121 - 140 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 26328 0.71 0.251493
Target:  5'- gCGCggGGCgAGGCCCgccucacGgGGCGGCGGCg -3'
miRNA:   3'- -GCGggCUG-UCCGGGa------CgCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 57292 0.71 0.251493
Target:  5'- gCGUCCaGCGcGGCCUUgGCGGC-GCGGCc -3'
miRNA:   3'- -GCGGGcUGU-CCGGGA-CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 34972 0.71 0.257259
Target:  5'- uGCaCCGugAGGCCCcauUGGCcgagGGCGGCc -3'
miRNA:   3'- gCG-GGCugUCCGGGac-GCCG----UCGCCG- -5'
29369 3' -65 NC_006151.1 + 3100 0.71 0.257259
Target:  5'- aGCgCCGAgAGGCCgCcGCGGC-GCGGg -3'
miRNA:   3'- gCG-GGCUgUCCGG-GaCGCCGuCGCCg -5'
29369 3' -65 NC_006151.1 + 132117 0.71 0.262541
Target:  5'- gCGCacgagCGGCAGGCCCaGCucgcgccGGCGGUGGUu -3'
miRNA:   3'- -GCGg----GCUGUCCGGGaCG-------CCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 54672 0.71 0.263133
Target:  5'- aCGaCCUGGcCGGGCaCCUGCgcgucgccGGCAGCGuGCu -3'
miRNA:   3'- -GC-GGGCU-GUCCG-GGACG--------CCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 54127 0.71 0.263133
Target:  5'- gGCUgcgGACGGGCUCUGCccCGGCGGCg -3'
miRNA:   3'- gCGGg--CUGUCCGGGACGccGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 135156 0.7 0.268512
Target:  5'- aGCCCGGCGGGCgCgGCccggacgGGCGcCGGCu -3'
miRNA:   3'- gCGGGCUGUCCGgGaCG-------CCGUcGCCG- -5'
29369 3' -65 NC_006151.1 + 50417 0.7 0.269115
Target:  5'- -cCCCGACgAGGaggcgcCCCUGCGcGcCGGCGGCc -3'
miRNA:   3'- gcGGGCUG-UCC------GGGACGC-C-GUCGCCG- -5'
29369 3' -65 NC_006151.1 + 10556 0.7 0.269115
Target:  5'- cCGCCCGGC--GCCCaauggcGCGGCcggcucGGCGGCc -3'
miRNA:   3'- -GCGGGCUGucCGGGa-----CGCCG------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 127364 0.7 0.269115
Target:  5'- uCGCCCugGGCGGGgaCC-GCGGgGGUGGCg -3'
miRNA:   3'- -GCGGG--CUGUCCg-GGaCGCCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 113032 0.7 0.269115
Target:  5'- gCGUgCGcCGGGUgCUGC-GCGGCGGCg -3'
miRNA:   3'- -GCGgGCuGUCCGgGACGcCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 5997 0.7 0.269115
Target:  5'- aGCCCGACcggGGGaCCCgGCGGCcGgGGa -3'
miRNA:   3'- gCGGGCUG---UCC-GGGaCGCCGuCgCCg -5'
29369 3' -65 NC_006151.1 + 68730 0.7 0.271539
Target:  5'- cCGCCCagcaGCGGGCCgCUcucgaaggucacguaGcCGGCGGUGGCg -3'
miRNA:   3'- -GCGGGc---UGUCCGG-GA---------------C-GCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 3145 0.7 0.273368
Target:  5'- gCGCCCucGGCGGGCUCggcGCagagcuccucguggGGCAGCGGg -3'
miRNA:   3'- -GCGGG--CUGUCCGGGa--CG--------------CCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 86119 0.7 0.274593
Target:  5'- uGUCCGGCuaccuGGCCCUGUacgauagGGaCGGCGGg -3'
miRNA:   3'- gCGGGCUGu----CCGGGACG-------CC-GUCGCCg -5'
29369 3' -65 NC_006151.1 + 121359 0.7 0.275207
Target:  5'- gGCCaGACGGGC---GCGGaCGGCGGCg -3'
miRNA:   3'- gCGGgCUGUCCGggaCGCC-GUCGCCG- -5'
29369 3' -65 NC_006151.1 + 123029 0.7 0.275207
Target:  5'- aCGCCgUGGCguGGGCggaCCUGcCGGCcGCGGCg -3'
miRNA:   3'- -GCGG-GCUG--UCCG---GGAC-GCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 138327 0.7 0.275207
Target:  5'- uGCCUG-CGGGCCCggcacGCGcGCAGCccgccGGCc -3'
miRNA:   3'- gCGGGCuGUCCGGGa----CGC-CGUCG-----CCG- -5'
29369 3' -65 NC_006151.1 + 119019 0.7 0.275207
Target:  5'- gGCCCGugcucuccgagGCGGGCgCCaaggacgGCGGCGccGCGGCc -3'
miRNA:   3'- gCGGGC-----------UGUCCG-GGa------CGCCGU--CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.