miRNA display CGI


Results 81 - 100 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 89937 0.67 0.4371
Target:  5'- gCGCCC--CAGGUCC-GCGGgC-GCGGCc -3'
miRNA:   3'- -GCGGGcuGUCCGGGaCGCC-GuCGCCG- -5'
29369 3' -65 NC_006151.1 + 90747 0.67 0.4371
Target:  5'- nCGCCCucgggggcGGCGGGCacgGUGGCGGgguCGGCg -3'
miRNA:   3'- -GCGGG--------CUGUCCGggaCGCCGUC---GCCG- -5'
29369 3' -65 NC_006151.1 + 17392 0.67 0.4371
Target:  5'- cCGCaCGACGGGgCgC-GUGGCGcGCGGCa -3'
miRNA:   3'- -GCGgGCUGUCCgG-GaCGCCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 76806 0.67 0.4371
Target:  5'- gCGcCCCGGCgAGGgCggGCGcGUAGUGGCg -3'
miRNA:   3'- -GC-GGGCUG-UCCgGgaCGC-CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 82406 0.67 0.4371
Target:  5'- gCGCCCGAgGgcGGCCCcGagaGGC-GCGGg -3'
miRNA:   3'- -GCGGGCUgU--CCGGGaCg--CCGuCGCCg -5'
29369 3' -65 NC_006151.1 + 117527 0.67 0.436248
Target:  5'- cCGCUCGG-GGGCCCccucccacGCGGCGacgcgccGCGGCc -3'
miRNA:   3'- -GCGGGCUgUCCGGGa-------CGCCGU-------CGCCG- -5'
29369 3' -65 NC_006151.1 + 84483 0.67 0.436248
Target:  5'- uCGCCUucgAGGCCgCUGCgaucccgGGCAGCGcGCg -3'
miRNA:   3'- -GCGGGcugUCCGG-GACG-------CCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 116429 0.67 0.428625
Target:  5'- aGCUCGGCAGcuucaGCUUgucgGCGGCGaCGGCg -3'
miRNA:   3'- gCGGGCUGUC-----CGGGa---CGCCGUcGCCG- -5'
29369 3' -65 NC_006151.1 + 11052 0.67 0.428625
Target:  5'- gGCCCGGCcuggacgcGGGCCacaCUGUG-CGGCGGa -3'
miRNA:   3'- gCGGGCUG--------UCCGG---GACGCcGUCGCCg -5'
29369 3' -65 NC_006151.1 + 115253 0.67 0.428625
Target:  5'- uCGCCaaaGAgCAGGUCCaccaGGCGGCGcGCg -3'
miRNA:   3'- -GCGGg--CU-GUCCGGGacg-CCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 140188 0.67 0.428625
Target:  5'- aCGCUgGACcccaucguGGCCaCcGCGGgGGCGGUg -3'
miRNA:   3'- -GCGGgCUGu-------CCGG-GaCGCCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 92650 0.67 0.428625
Target:  5'- aCGCCggcaaGGCGcucGCCCUGCuGcCGGCGGCc -3'
miRNA:   3'- -GCGGg----CUGUc--CGGGACGcC-GUCGCCG- -5'
29369 3' -65 NC_006151.1 + 110190 0.67 0.428625
Target:  5'- cCGCCUGAUAGcGCgccgCCUGCGGgAgacGCGGa -3'
miRNA:   3'- -GCGGGCUGUC-CG----GGACGCCgU---CGCCg -5'
29369 3' -65 NC_006151.1 + 118341 0.67 0.428625
Target:  5'- gCGCCCGcccucuCGcGCgCCUGCgaGGCGGCGcGCg -3'
miRNA:   3'- -GCGGGCu-----GUcCG-GGACG--CCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 87387 0.67 0.428625
Target:  5'- cCGCCCaGguGGUCCcGCaGCAGcCGGUg -3'
miRNA:   3'- -GCGGGcUguCCGGGaCGcCGUC-GCCG- -5'
29369 3' -65 NC_006151.1 + 106996 0.67 0.427783
Target:  5'- uGCCUGGCGccgcagcuggagcGGCUCUcggcgcugaucGCGGC-GCGGCc -3'
miRNA:   3'- gCGGGCUGU-------------CCGGGA-----------CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 29411 0.67 0.427783
Target:  5'- cCGCgCGGagaAGGCUCggUGUGGCcgcggggGGCGGCg -3'
miRNA:   3'- -GCGgGCUg--UCCGGG--ACGCCG-------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 68884 0.67 0.426942
Target:  5'- gCGCCCGGCcacgucgaggacGGCCUcGCGGUcgcgcgGGCGGa -3'
miRNA:   3'- -GCGGGCUGu-----------CCGGGaCGCCG------UCGCCg -5'
29369 3' -65 NC_006151.1 + 66921 0.67 0.426102
Target:  5'- gGCCaCGAUggaggcgggggcgaGGGCaaagGCGGCGGCGGg -3'
miRNA:   3'- gCGG-GCUG--------------UCCGgga-CGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 37451 0.67 0.425263
Target:  5'- aCGUCCGcCAGGCC--GCGGCccgcuaccgcgccGCGGCc -3'
miRNA:   3'- -GCGGGCuGUCCGGgaCGCCGu------------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.