miRNA display CGI


Results 101 - 120 of 365 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 4906 0.67 0.420249
Target:  5'- aGCCgGGCcaGGGCUCcccgagcgggGUGaGCAGCGGCc -3'
miRNA:   3'- gCGGgCUG--UCCGGGa---------CGC-CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 36005 0.67 0.420249
Target:  5'- gCGUCCGGC---CCCgacgGCGGCAGCcagGGCu -3'
miRNA:   3'- -GCGGGCUGuccGGGa---CGCCGUCG---CCG- -5'
29369 3' -65 NC_006151.1 + 37945 0.67 0.420249
Target:  5'- aGCCCGGCcgcGuGCCCcGCGaGCuGGCGGa -3'
miRNA:   3'- gCGGGCUGu--C-CGGGaCGC-CG-UCGCCg -5'
29369 3' -65 NC_006151.1 + 94284 0.67 0.420249
Target:  5'- uCGCCCagcGGCAGGUCCgucuCGaGCcAGCGGUu -3'
miRNA:   3'- -GCGGG---CUGUCCGGGac--GC-CG-UCGCCG- -5'
29369 3' -65 NC_006151.1 + 17471 0.67 0.420249
Target:  5'- uGCCgCGGCGuGUCCUcGuCGGCGGCGcGCc -3'
miRNA:   3'- gCGG-GCUGUcCGGGA-C-GCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 72925 0.67 0.420249
Target:  5'- cCGCCuCGGCGGGCgugaagaaCUUGaaGCAGgGGCu -3'
miRNA:   3'- -GCGG-GCUGUCCG--------GGACgcCGUCgCCG- -5'
29369 3' -65 NC_006151.1 + 84123 0.67 0.420249
Target:  5'- aCGCCCaGCAaGCgCg--GGCAGCGGCa -3'
miRNA:   3'- -GCGGGcUGUcCGgGacgCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 124065 0.67 0.420249
Target:  5'- aCGCgCgGAC-GGCCgUGCGcGCGGCcGCg -3'
miRNA:   3'- -GCG-GgCUGuCCGGgACGC-CGUCGcCG- -5'
29369 3' -65 NC_006151.1 + 15229 0.67 0.417755
Target:  5'- gCGCCCcucggcccccugcuGGCAGGCCCUGCucCAGCu-- -3'
miRNA:   3'- -GCGGG--------------CUGUCCGGGACGccGUCGccg -5'
29369 3' -65 NC_006151.1 + 84667 0.67 0.415271
Target:  5'- gCGCCuCGA--GGCCgagguggacgagcagCUGCGGCcgcuggAGCGGCa -3'
miRNA:   3'- -GCGG-GCUguCCGG---------------GACGCCG------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 117055 0.67 0.411972
Target:  5'- aGCUgGGCAGGUCgUGguCGaGCAGCaGGCg -3'
miRNA:   3'- gCGGgCUGUCCGGgAC--GC-CGUCG-CCG- -5'
29369 3' -65 NC_006151.1 + 88066 0.67 0.411972
Target:  5'- aGCUgcgagGGCAGGCCCUcgaGGCGGCaGGUg -3'
miRNA:   3'- gCGGg----CUGUCCGGGAcg-CCGUCG-CCG- -5'
29369 3' -65 NC_006151.1 + 5242 0.67 0.411972
Target:  5'- cCGCgCGGCggcggcggGGGCCCggGgGGCGGagGGCg -3'
miRNA:   3'- -GCGgGCUG--------UCCGGGa-CgCCGUCg-CCG- -5'
29369 3' -65 NC_006151.1 + 36708 0.67 0.411972
Target:  5'- uGCUCGACGaGCCCgccGCcGCgaGGCGGCu -3'
miRNA:   3'- gCGGGCUGUcCGGGa--CGcCG--UCGCCG- -5'
29369 3' -65 NC_006151.1 + 29589 0.67 0.411972
Target:  5'- uCGCggCGGCugcGGCCgCgGCGGCGGgGGCu -3'
miRNA:   3'- -GCGg-GCUGu--CCGG-GaCGCCGUCgCCG- -5'
29369 3' -65 NC_006151.1 + 63492 0.67 0.411972
Target:  5'- nCGCCCGAagaagguGGCCagGUGGgGGCGcGCg -3'
miRNA:   3'- -GCGGGCUgu-----CCGGgaCGCCgUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 97599 0.67 0.41115
Target:  5'- aGCgCGcacGCGGGCacgugcaCCUGCGaGCGGCGcGCg -3'
miRNA:   3'- gCGgGC---UGUCCG-------GGACGC-CGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 52775 0.67 0.41115
Target:  5'- gCGCCgCGGCGuccuggucgcGGCUCUGCGaguaguuggugauGCGGcCGGCg -3'
miRNA:   3'- -GCGG-GCUGU----------CCGGGACGC-------------CGUC-GCCG- -5'
29369 3' -65 NC_006151.1 + 83017 0.67 0.41115
Target:  5'- aCGCgCGGCgaGGGCCCcagGUcgacgguggagacGcGCAGCGGCa -3'
miRNA:   3'- -GCGgGCUG--UCCGGGa--CG-------------C-CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 21049 0.68 0.403797
Target:  5'- aCGCCCccGACgcgcgGGGUCaggGCGGCcagggucagGGCGGCg -3'
miRNA:   3'- -GCGGG--CUG-----UCCGGga-CGCCG---------UCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.