miRNA display CGI


Results 81 - 100 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 36102 0.66 0.489858
Target:  5'- cCGCCgaGGCcgAGGCcgccguCCUcGCGGCcGCGGCc -3'
miRNA:   3'- -GCGGg-CUG--UCCG------GGA-CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 36513 0.68 0.3645
Target:  5'- aGCCCG---GGCCg-GCGGC-GCGGCc -3'
miRNA:   3'- gCGGGCuguCCGGgaCGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 36624 0.8 0.056415
Target:  5'- gGCCgGucuCGGcGCCCgGCGGCGGCGGCg -3'
miRNA:   3'- gCGGgCu--GUC-CGGGaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 36708 0.67 0.411972
Target:  5'- uGCUCGACGaGCCCgccGCcGCgaGGCGGCu -3'
miRNA:   3'- gCGGGCUGUcCGGGa--CGcCG--UCGCCG- -5'
29369 3' -65 NC_006151.1 + 36915 0.72 0.219109
Target:  5'- gCGCCgGAgAGGCgCCcuccgccGCGGCcGCGGCu -3'
miRNA:   3'- -GCGGgCUgUCCG-GGa------CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 37007 0.66 0.486246
Target:  5'- cCGCCCccCGGGCCCccgccgccgccgcGCGGCGcuCGGCc -3'
miRNA:   3'- -GCGGGcuGUCCGGGa------------CGCCGUc-GCCG- -5'
29369 3' -65 NC_006151.1 + 37177 0.73 0.173071
Target:  5'- gCGCCCGcCGcGGCCCcGCGGCccuCGGCc -3'
miRNA:   3'- -GCGGGCuGU-CCGGGaCGCCGuc-GCCG- -5'
29369 3' -65 NC_006151.1 + 37451 0.67 0.425263
Target:  5'- aCGUCCGcCAGGCC--GCGGCccgcuaccgcgccGCGGCc -3'
miRNA:   3'- -GCGGGCuGUCCGGgaCGCCGu------------CGCCG- -5'
29369 3' -65 NC_006151.1 + 37733 0.74 0.153075
Target:  5'- cCGCCCagGACccgcucuGGGCCCUGCcGCAcGCGGUg -3'
miRNA:   3'- -GCGGG--CUG-------UCCGGGACGcCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 37945 0.67 0.420249
Target:  5'- aGCCCGGCcgcGuGCCCcGCGaGCuGGCGGa -3'
miRNA:   3'- gCGGGCUGu--C-CGGGaCGC-CG-UCGCCg -5'
29369 3' -65 NC_006151.1 + 38128 0.74 0.168975
Target:  5'- gGgCCGGCccGGCCgaGCGGCGGCaGGCc -3'
miRNA:   3'- gCgGGCUGu-CCGGgaCGCCGUCG-CCG- -5'
29369 3' -65 NC_006151.1 + 38362 0.71 0.249784
Target:  5'- aGCCCGGCcucgucgucccagcGccGGCgCCgGCGGCGGCGGg -3'
miRNA:   3'- gCGGGCUG--------------U--CCG-GGaCGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 38538 0.66 0.496209
Target:  5'- gGCCCGGaccCAGcGCCCgaGCGGCGcaagaagaagcgccGCGcGCc -3'
miRNA:   3'- gCGGGCU---GUC-CGGGa-CGCCGU--------------CGC-CG- -5'
29369 3' -65 NC_006151.1 + 38627 0.66 0.508101
Target:  5'- -cUCCGGCGcGGCCCUccGCGGgGaCGGCc -3'
miRNA:   3'- gcGGGCUGU-CCGGGA--CGCCgUcGCCG- -5'
29369 3' -65 NC_006151.1 + 38789 0.69 0.33288
Target:  5'- gCGCCCGcuCGGGCCCaUGCccgaGCaccccgcgcccgacGGCGGCu -3'
miRNA:   3'- -GCGGGCu-GUCCGGG-ACGc---CG--------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 39139 0.76 0.117212
Target:  5'- gCGCCCGGCcuGGGaCCC-GCGccGCGGCGGCc -3'
miRNA:   3'- -GCGGGCUG--UCC-GGGaCGC--CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 39335 0.67 0.445669
Target:  5'- uGCUCG-C-GGCUCggcGCGGC-GCGGCg -3'
miRNA:   3'- gCGGGCuGuCCGGGa--CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 40435 0.68 0.393324
Target:  5'- gGCCCGGCGgcgcuugccuccccGGCgCCUGCcuccccGGCccGGUGGCc -3'
miRNA:   3'- gCGGGCUGU--------------CCG-GGACG------CCG--UCGCCG- -5'
29369 3' -65 NC_006151.1 + 40515 0.76 0.111545
Target:  5'- -cCCCGGCcggAGGUggCUGCGGCGGCGGCg -3'
miRNA:   3'- gcGGGCUG---UCCGg-GACGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 40577 0.67 0.4371
Target:  5'- gGCCgCGGCggaGGGCUCgGCGGCGGaGGa -3'
miRNA:   3'- gCGG-GCUG---UCCGGGaCGCCGUCgCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.