miRNA display CGI


Results 101 - 120 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 41102 0.69 0.349538
Target:  5'- gGuCCCGGCGGGUCCUGgugggaGGUAGaUGGUc -3'
miRNA:   3'- gC-GGGCUGUCCGGGACg-----CCGUC-GCCG- -5'
29369 3' -65 NC_006151.1 + 44179 0.69 0.342224
Target:  5'- aGCaCCG-CGGGUcgCCguccggGCGGCGGCGGg -3'
miRNA:   3'- gCG-GGCuGUCCG--GGa-----CGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 44667 0.73 0.194904
Target:  5'- aGCCCGACAcauGCgCacgGCGGcCGGCGGCu -3'
miRNA:   3'- gCGGGCUGUc--CGgGa--CGCC-GUCGCCG- -5'
29369 3' -65 NC_006151.1 + 44879 0.67 0.454332
Target:  5'- uCGCCCGACcucGGCggUgUGCGGUGGUGuGUg -3'
miRNA:   3'- -GCGGGCUGu--CCG--GgACGCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 45577 0.67 0.445669
Target:  5'- uCGuCCCGGgAcGGCCCgagGgGGCGGgGGg -3'
miRNA:   3'- -GC-GGGCUgU-CCGGGa--CgCCGUCgCCg -5'
29369 3' -65 NC_006151.1 + 46584 0.7 0.281408
Target:  5'- gGCCCGACGggcGGCCgUGCugaGGC-GCGaGCa -3'
miRNA:   3'- gCGGGCUGU---CCGGgACG---CCGuCGC-CG- -5'
29369 3' -65 NC_006151.1 + 48717 0.74 0.145822
Target:  5'- cCGCCCGGCccgcgaaGGGCacgCCcGCGGCgucGGCGGCa -3'
miRNA:   3'- -GCGGGCUG-------UCCG---GGaCGCCG---UCGCCG- -5'
29369 3' -65 NC_006151.1 + 49243 0.66 0.489858
Target:  5'- cCGCUCGGCugggcgcGGCUCgUGCGcGCcgucguccAGCGGCu -3'
miRNA:   3'- -GCGGGCUGu------CCGGG-ACGC-CG--------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 49593 0.66 0.498942
Target:  5'- gCGcCCCGGcCAGcGCgCUGcCGGUccuGGCGGUg -3'
miRNA:   3'- -GC-GGGCU-GUC-CGgGAC-GCCG---UCGCCG- -5'
29369 3' -65 NC_006151.1 + 50010 0.69 0.327927
Target:  5'- gCGCCgCGcGCGcGGCCCgcGCGGCGcccccgggcGCGGCc -3'
miRNA:   3'- -GCGG-GC-UGU-CCGGGa-CGCCGU---------CGCCG- -5'
29369 3' -65 NC_006151.1 + 50371 0.7 0.307321
Target:  5'- cCGCCgGcgggggcgagacGCGGGCCCcGCGGUccucgcGCGGCc -3'
miRNA:   3'- -GCGGgC------------UGUCCGGGaCGCCGu-----CGCCG- -5'
29369 3' -65 NC_006151.1 + 50417 0.7 0.269115
Target:  5'- -cCCCGACgAGGaggcgcCCCUGCGcGcCGGCGGCc -3'
miRNA:   3'- gcGGGCUG-UCC------GGGACGC-C-GUCGCCG- -5'
29369 3' -65 NC_006151.1 + 50458 0.7 0.307321
Target:  5'- cCGCCCG-CGGGCgCUcGCGcCAgcGCGGCg -3'
miRNA:   3'- -GCGGGCuGUCCGgGA-CGCcGU--CGCCG- -5'
29369 3' -65 NC_006151.1 + 50602 0.69 0.349538
Target:  5'- aGCa--GCGGGCCCcgcgccgccGCGGCAGCGuGCa -3'
miRNA:   3'- gCGggcUGUCCGGGa--------CGCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 51217 0.79 0.072788
Target:  5'- cCGCCCG-CGGGCCCgcgcagGCGGC-GCGaGCg -3'
miRNA:   3'- -GCGGGCuGUCCGGGa-----CGCCGuCGC-CG- -5'
29369 3' -65 NC_006151.1 + 51482 0.66 0.463085
Target:  5'- aGCCCGACuGcGCCCaGCcgccgGGCAGCu-- -3'
miRNA:   3'- gCGGGCUGuC-CGGGaCG-----CCGUCGccg -5'
29369 3' -65 NC_006151.1 + 52375 0.77 0.098481
Target:  5'- gCGCCCccgGGGCCC-GCGGgGGCGGCg -3'
miRNA:   3'- -GCGGGcugUCCGGGaCGCCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 52775 0.67 0.41115
Target:  5'- gCGCCgCGGCGuccuggucgcGGCUCUGCGaguaguuggugauGCGGcCGGCg -3'
miRNA:   3'- -GCGG-GCUGU----------CCGGGACGC-------------CGUC-GCCG- -5'
29369 3' -65 NC_006151.1 + 53940 0.71 0.239731
Target:  5'- cCGCCgCGGCgAGggacuugaaccacGCCa-GCGGCGGCGGCg -3'
miRNA:   3'- -GCGG-GCUG-UC-------------CGGgaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 54073 0.73 0.18153
Target:  5'- gGCgCG-CGGaCCCucUGCGGCGGCGGCg -3'
miRNA:   3'- gCGgGCuGUCcGGG--ACGCCGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.