miRNA display CGI


Results 121 - 140 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 54127 0.71 0.263133
Target:  5'- gGCUgcgGACGGGCUCUGCccCGGCGGCg -3'
miRNA:   3'- gCGGg--CUGUCCGGGACGccGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 54373 0.68 0.386968
Target:  5'- gGCCCGGgacuggaUGGcGCaCCUGCGcGCGcGCGGCc -3'
miRNA:   3'- gCGGGCU-------GUC-CG-GGACGC-CGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 54491 0.66 0.496209
Target:  5'- aCGCUgcaGAU-GGCCCUccuggacuuugugcGCGGCAucGCGGCc -3'
miRNA:   3'- -GCGGg--CUGuCCGGGA--------------CGCCGU--CGCCG- -5'
29369 3' -65 NC_006151.1 + 54619 0.68 0.356964
Target:  5'- gCGCCgGGCGcGCCCcGgGGggaAGCGGCg -3'
miRNA:   3'- -GCGGgCUGUcCGGGaCgCCg--UCGCCG- -5'
29369 3' -65 NC_006151.1 + 54672 0.71 0.263133
Target:  5'- aCGaCCUGGcCGGGCaCCUGCgcgucgccGGCAGCGuGCu -3'
miRNA:   3'- -GC-GGGCU-GUCCG-GGACG--------CCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 55068 0.73 0.194904
Target:  5'- gGaCCCGGCGGGCUCgGCcGCGGCGcGCc -3'
miRNA:   3'- gC-GGGCUGUCCGGGaCGcCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 55401 0.76 0.106135
Target:  5'- gCGCCUGcgcgaGCAGGCCCUGCGcGCcgcgcaGGCGGg -3'
miRNA:   3'- -GCGGGC-----UGUCCGGGACGC-CG------UCGCCg -5'
29369 3' -65 NC_006151.1 + 56581 0.8 0.056415
Target:  5'- cCGCCCGACGGGCUggUGCGGacgcgcccCGGCGGCg -3'
miRNA:   3'- -GCGGGCUGUCCGGg-ACGCC--------GUCGCCG- -5'
29369 3' -65 NC_006151.1 + 57126 0.79 0.069184
Target:  5'- gCGCCCGGCGGucGCCCcugcgcacGCGGCGGgGGCg -3'
miRNA:   3'- -GCGGGCUGUC--CGGGa-------CGCCGUCgCCG- -5'
29369 3' -65 NC_006151.1 + 57216 0.75 0.135861
Target:  5'- cCGCUCGACgAGGCCgUcGCaGGCGGCGcGCg -3'
miRNA:   3'- -GCGGGCUG-UCCGGgA-CG-CCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 57292 0.71 0.251493
Target:  5'- gCGUCCaGCGcGGCCUUgGCGGC-GCGGCc -3'
miRNA:   3'- -GCGGGcUGU-CCGGGA-CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 57486 0.72 0.213573
Target:  5'- gGCCUcGCAGGCgacgcgcacgcgcUCggccGCGGCGGCGGCg -3'
miRNA:   3'- gCGGGcUGUCCG-------------GGa---CGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 59143 0.72 0.229489
Target:  5'- gCGCCCGcggGCGGGUCCagGcCGGCGucgcgcagcagcGCGGCg -3'
miRNA:   3'- -GCGGGC---UGUCCGGGa-C-GCCGU------------CGCCG- -5'
29369 3' -65 NC_006151.1 + 59212 0.66 0.471926
Target:  5'- aCGCgCG-UGGGCCCcgggaacgucUGcCGGCuGCGGCc -3'
miRNA:   3'- -GCGgGCuGUCCGGG----------AC-GCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 59293 0.68 0.387758
Target:  5'- aGCgCGGCGuGGCgCCcGCGGCucAGCGGg -3'
miRNA:   3'- gCGgGCUGU-CCG-GGaCGCCG--UCGCCg -5'
29369 3' -65 NC_006151.1 + 59500 0.68 0.387758
Target:  5'- aGCCCGGC-GGCCUccgcgacgcGCGcGCAGCGccGCg -3'
miRNA:   3'- gCGGGCUGuCCGGGa--------CGC-CGUCGC--CG- -5'
29369 3' -65 NC_006151.1 + 60094 0.76 0.117212
Target:  5'- cCGCCgCGAac-GCCggGCGGCAGCGGCg -3'
miRNA:   3'- -GCGG-GCUgucCGGgaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 60712 0.74 0.149771
Target:  5'- cCGCCgCGACcucGGCCCcgaggUGCcggagcacgaGGCAGCGGCg -3'
miRNA:   3'- -GCGG-GCUGu--CCGGG-----ACG----------CCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 60858 0.69 0.349538
Target:  5'- gCGUCCauGACgAGGaCCC-GCGGCAGCcGCg -3'
miRNA:   3'- -GCGGG--CUG-UCC-GGGaCGCCGUCGcCG- -5'
29369 3' -65 NC_006151.1 + 62517 0.7 0.285815
Target:  5'- gGCCCGGCGGuaCCUGCagaagcgccugcacGGCcGgGGCa -3'
miRNA:   3'- gCGGGCUGUCcgGGACG--------------CCGuCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.