miRNA display CGI


Results 61 - 80 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 122269 0.69 0.33502
Target:  5'- gGCCaCGcACAGGCgCCUGCucGGCuGCGuGUg -3'
miRNA:   3'- gCGG-GC-UGUCCG-GGACG--CCGuCGC-CG- -5'
29369 3' -65 NC_006151.1 + 121714 0.68 0.356964
Target:  5'- gGCUCGugGcGGUCCUGgGGCAG-GuGCa -3'
miRNA:   3'- gCGGGCugU-CCGGGACgCCGUCgC-CG- -5'
29369 3' -65 NC_006151.1 + 121687 0.7 0.300676
Target:  5'- gGgCCGACccGGCCaugGCGG-AGCGGCg -3'
miRNA:   3'- gCgGGCUGu-CCGGga-CGCCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 121390 0.72 0.219109
Target:  5'- cCGCCuuCGACuuuGGGgCCUGCGGCgcgGGCGGg -3'
miRNA:   3'- -GCGG--GCUG---UCCgGGACGCCG---UCGCCg -5'
29369 3' -65 NC_006151.1 + 121359 0.7 0.275207
Target:  5'- gGCCaGACGGGC---GCGGaCGGCGGCg -3'
miRNA:   3'- gCGGgCUGUCCGggaCGCC-GUCGCCG- -5'
29369 3' -65 NC_006151.1 + 121300 0.66 0.480851
Target:  5'- cCGaCCgCGACGGGCgCUggagcGUGGaGGCGGCc -3'
miRNA:   3'- -GC-GG-GCUGUCCGgGA-----CGCCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 121145 0.69 0.320947
Target:  5'- gGCCgaCGGCGGGCCgCUG-GuGCAGaCGGCc -3'
miRNA:   3'- gCGG--GCUGUCCGG-GACgC-CGUC-GCCG- -5'
29369 3' -65 NC_006151.1 + 121056 0.68 0.387758
Target:  5'- uGCCCGcGCguGGGCUUcacgUGCucgcagacgGGCGGCGGCg -3'
miRNA:   3'- gCGGGC-UG--UCCGGG----ACG---------CCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 120738 0.73 0.194445
Target:  5'- gCGCCCG-CGGGaCCCgGCcgcgucauggccuGGguGCGGCg -3'
miRNA:   3'- -GCGGGCuGUCC-GGGaCG-------------CCguCGCCG- -5'
29369 3' -65 NC_006151.1 + 120466 0.68 0.3645
Target:  5'- cCGCCCGGCGGGCagaGCcccaacccGCAGUGGUu -3'
miRNA:   3'- -GCGGGCUGUCCGggaCGc-------CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 119837 0.7 0.307321
Target:  5'- uGCgCGACAcGGUCgaGCaGGCGGCGGa -3'
miRNA:   3'- gCGgGCUGU-CCGGgaCG-CCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 119078 0.72 0.204293
Target:  5'- gCGCCCGucucGCAGGCC--GCGGCGcuCGGCg -3'
miRNA:   3'- -GCGGGC----UGUCCGGgaCGCCGUc-GCCG- -5'
29369 3' -65 NC_006151.1 + 119019 0.7 0.275207
Target:  5'- gGCCCGugcucuccgagGCGGGCgCCaaggacgGCGGCGccGCGGCc -3'
miRNA:   3'- gCGGGC-----------UGUCCG-GGa------CGCCGU--CGCCG- -5'
29369 3' -65 NC_006151.1 + 118749 0.66 0.463085
Target:  5'- gGCCCGGC-GGCCgUGCcacgcGCGuGCGGa -3'
miRNA:   3'- gCGGGCUGuCCGGgACGc----CGU-CGCCg -5'
29369 3' -65 NC_006151.1 + 118417 0.66 0.479955
Target:  5'- aCGCCgaggagaCGACGGGCgCggagGUGuGCGcGCGGCu -3'
miRNA:   3'- -GCGG-------GCUGUCCGgGa---CGC-CGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 118341 0.67 0.428625
Target:  5'- gCGCCCGcccucuCGcGCgCCUGCgaGGCGGCGcGCg -3'
miRNA:   3'- -GCGGGCu-----GUcCG-GGACG--CCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 118228 0.69 0.314078
Target:  5'- gCGCCCGGaccacCGGGCUCgGCGGCG--GGCu -3'
miRNA:   3'- -GCGGGCU-----GUCCGGGaCGCCGUcgCCG- -5'
29369 3' -65 NC_006151.1 + 118140 0.7 0.294142
Target:  5'- aGCgCCGACGacGCC--GCGGCGGUGGCg -3'
miRNA:   3'- gCG-GGCUGUc-CGGgaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 117800 0.66 0.472815
Target:  5'- aCGCCCGGCggggcgGGGCCCcacgcuuuaagaccCGGCcGgGGCg -3'
miRNA:   3'- -GCGGGCUG------UCCGGGac------------GCCGuCgCCG- -5'
29369 3' -65 NC_006151.1 + 117527 0.67 0.436248
Target:  5'- cCGCUCGG-GGGCCCccucccacGCGGCGacgcgccGCGGCc -3'
miRNA:   3'- -GCGGGCUgUCCGGGa-------CGCCGU-------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.