miRNA display CGI


Results 81 - 100 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 117255 0.68 0.379898
Target:  5'- gGCCCGaggcGCGGGCCgCgcGCGGCcgccgccgacAGCGcGCg -3'
miRNA:   3'- gCGGGC----UGUCCGG-Ga-CGCCG----------UCGC-CG- -5'
29369 3' -65 NC_006151.1 + 117055 0.67 0.411972
Target:  5'- aGCUgGGCAGGUCgUGguCGaGCAGCaGGCg -3'
miRNA:   3'- gCGGgCUGUCCGGgAC--GC-CGUCG-CCG- -5'
29369 3' -65 NC_006151.1 + 117020 0.68 0.3645
Target:  5'- -cCCCG-CGGGCCCggGCcGCAgGCGGUa -3'
miRNA:   3'- gcGGGCuGUCCGGGa-CGcCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 116429 0.67 0.428625
Target:  5'- aGCUCGGCAGcuucaGCUUgucgGCGGCGaCGGCg -3'
miRNA:   3'- gCGGGCUGUC-----CGGGa---CGCCGUcGCCG- -5'
29369 3' -65 NC_006151.1 + 116328 0.73 0.194445
Target:  5'- gCGCUCGcGCGGGCCC-GCGGCGuaguaccGCGGg -3'
miRNA:   3'- -GCGGGC-UGUCCGGGaCGCCGU-------CGCCg -5'
29369 3' -65 NC_006151.1 + 115253 0.67 0.428625
Target:  5'- uCGCCaaaGAgCAGGUCCaccaGGCGGCGcGCg -3'
miRNA:   3'- -GCGGg--CU-GUCCGGGacg-CCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 115140 0.68 0.371375
Target:  5'- gCGCCuCGGcCAGcacgcGCCCgaagGCGGCGaagccgcGCGGCa -3'
miRNA:   3'- -GCGG-GCU-GUC-----CGGGa---CGCCGU-------CGCCG- -5'
29369 3' -65 NC_006151.1 + 113867 0.7 0.277674
Target:  5'- aGCgaCGGC-GGCuCCUGCGGCGcaagucgucggccgcGCGGCg -3'
miRNA:   3'- gCGg-GCUGuCCG-GGACGCCGU---------------CGCCG- -5'
29369 3' -65 NC_006151.1 + 113419 0.67 0.445669
Target:  5'- gCGCaCUGGCuGGCgCUGCgccgcuuccGGC-GCGGCg -3'
miRNA:   3'- -GCG-GGCUGuCCGgGACG---------CCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 113032 0.7 0.269115
Target:  5'- gCGUgCGcCGGGUgCUGC-GCGGCGGCg -3'
miRNA:   3'- -GCGgGCuGUCCGgGACGcCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 112583 0.68 0.387758
Target:  5'- uCGCCCG-CGGGCUUcGUGGaggccgccGCGGCg -3'
miRNA:   3'- -GCGGGCuGUCCGGGaCGCCgu------CGCCG- -5'
29369 3' -65 NC_006151.1 + 112044 0.77 0.09135
Target:  5'- gGgCCGGCGGGCgg-GCGGCGGCGGUg -3'
miRNA:   3'- gCgGGCUGUCCGggaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 110435 0.69 0.33502
Target:  5'- gGCCCGAgucCGGGCCCaaagacuUGGUGGCGGg -3'
miRNA:   3'- gCGGGCU---GUCCGGGac-----GCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 110190 0.67 0.428625
Target:  5'- cCGCCUGAUAGcGCgccgCCUGCGGgAgacGCGGa -3'
miRNA:   3'- -GCGGGCUGUC-CG----GGACGCCgU---CGCCg -5'
29369 3' -65 NC_006151.1 + 109868 0.66 0.510863
Target:  5'- aCGaCCUGACGGcgcucgucccucccGCCCauccuccgccgcgGCGGCAGCaGCa -3'
miRNA:   3'- -GC-GGGCUGUC--------------CGGGa------------CGCCGUCGcCG- -5'
29369 3' -65 NC_006151.1 + 109311 0.76 0.117212
Target:  5'- cCGCCuCGGC-GGCagCaGCGGCGGCGGCa -3'
miRNA:   3'- -GCGG-GCUGuCCGg-GaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 109027 0.76 0.111545
Target:  5'- uGCuCCaACGGGCCCaccgGCGGCAGCaGCa -3'
miRNA:   3'- gCG-GGcUGUCCGGGa---CGCCGUCGcCG- -5'
29369 3' -65 NC_006151.1 + 107885 0.67 0.445669
Target:  5'- gGCCCccCAGGCCCaGCcGCccgccGCGGCc -3'
miRNA:   3'- gCGGGcuGUCCGGGaCGcCGu----CGCCG- -5'
29369 3' -65 NC_006151.1 + 106996 0.67 0.427783
Target:  5'- uGCCUGGCGccgcagcuggagcGGCUCUcggcgcugaucGCGGC-GCGGCc -3'
miRNA:   3'- gCGGGCUGU-------------CCGGGA-----------CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 106782 0.74 0.161042
Target:  5'- gCGCCUGGaccuGGCC--GCGGCGGCGGUg -3'
miRNA:   3'- -GCGGGCUgu--CCGGgaCGCCGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.